Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

61799377 .. 61801466

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGACCCCAAAGAGGCCGCCGATATCGACATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGAAGATATAAGATTCATGTGTACAACTTCGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCACGCATTTGTTAAAATTGTTCAATTAATTAACTTCGGAAACAGCAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTGTAGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTGTTCGACTATGCATCCCCGTCAAAGAAGTATCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAAGAATCTGTTCACTTATTCATTCTGTACTTGAGGTTGGCACGGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAAGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGTTGTGGATAAGTTTCCCATGAAGGCTCTGAAGAGTTTGATCGGCATTAGGGATTTTGCTGGCATCCTTCTGGGACTTTTCAACAAGTTCAAAATTGATAGATTCCTTTCCGTGCTTTTGGATTCTCTTGTTGACTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

361

Amino Acids

40.43

Weight (kDa)

8.84

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	233 - 357	1.7e-16	U3 small nucleolar RNA-associated protein 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	3 cut(s)	76, 120, 193
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	3 cut(s)	875, 882, 992
AfaI	GTAC	6 cut(s)	184, 302, 359, 389, 425, 729
AfiI	CCNNNNNNNGG	3 cut(s)	115, 192, 235
AgsI	TTSAA	6 cut(s)	161, 458, 621, 686, 1024, 1033
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	5 cut(s)	172, 225, 331, 884, 895
AluI	AGCT	5 cut(s)	172, 225, 331, 884, 895
Alw21I	GWGCWC	2 cut(s)	333, 418
Alw26I	GTCTC	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	77, 117, 614
ApeKI	GCWGC	2 cut(s)	518, 544
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	2 cut(s)	461, 845
Asp700I	GAANNNNTTC	1 cut(s)	709
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	819
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	333, 418
BbvI	GCAGC	2 cut(s)	530, 556
BccI	CCATC	4 cut(s)	104, 250, 343, 740
BceAI	ACGGC	3 cut(s)	134, 406, 660
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BclI	TGATCA	2 cut(s)	630, 921
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	2 cut(s)	528, 794
BfmI	CTRYAG	1 cut(s)	1078
BfoI	RGCGCY	1 cut(s)	524
BisI	GCNGC	4 cut(s)	77, 120, 519, 545
BlsI	GCNGC	4 cut(s)	78, 121, 520, 546
BmcAI	AGTACT	2 cut(s)	302, 359
Bme1390I	CCNGG	1 cut(s)	819
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	819
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	5 cut(s)	274, 602, 686, 859, 1014
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	16
BpuEI	CTTGAG	4 cut(s)	188, 325, 329, 752
BpuMI	CCSGG	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	425
BsaXI	ACNNNNNCTCC	4 cut(s)	566, 596, 799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 192, 235
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	554
BseGI	GGATG	5 cut(s)	96, 593, 751, 874, 1005
BseLI	CCNNNNNNNGG	3 cut(s)	115, 192, 235
BseMI	GCAATG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	530, 556
BsgI	GTGCAG	2 cut(s)	537, 563
BshFI	GGCC	3 cut(s)	79, 119, 616
BsiHKAI	GWGCWC	2 cut(s)	333, 418
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	819
BslFI	GGGAC	2 cut(s)	4, 1029
BslI	CCNNNNNNNGG	3 cut(s)	115, 192, 235
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	4, 1029
BsnI	GGCC	3 cut(s)	79, 119, 616
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	333, 418
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	630, 886, 921, 981
BspACI	CCGC	3 cut(s)	76, 120, 193
BspANI	GGCC	3 cut(s)	79, 119, 616
BspLI	GGNNCC	1 cut(s)	197
BspOI	GCTAGC	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	554
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	4 cut(s)	630, 886, 921, 981
Bst6I	CTCTTC	3 cut(s)	107, 858, 968
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	2 cut(s)	795, 1003
BstF5I	GGATG	5 cut(s)	96, 593, 751, 874, 1005
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	633, 889, 924, 984
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	4 cut(s)	630, 886, 921, 981
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 319, 328, 622, 857
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	1 cut(s)	1078
BstV1I	GCAGC	2 cut(s)	530, 556
BsuRI	GGCC	3 cut(s)	79, 119, 616
BtsCI	GGATG	5 cut(s)	96, 593, 751, 874, 1005
Cac8I	GCNNGC	2 cut(s)	795, 1003
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	6 cut(s)	183, 301, 358, 388, 424, 728
CviAII	CATG	5 cut(s)	383, 428, 562, 692, 961
CviQI	GTAC	6 cut(s)	183, 301, 358, 388, 424, 728
DpnI	GATC	4 cut(s)	632, 888, 923, 983
DpnII	GATC	4 cut(s)	630, 886, 921, 981
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	107, 858, 968
EarI	CTCTTC	3 cut(s)	107, 858, 968
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	3 cut(s)	875, 882, 992
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	5 cut(s)	386, 431, 565, 695, 964
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 200, 232
FaqI	GGGAC	2 cut(s)	4, 1029
FatI	CATG	5 cut(s)	382, 427, 561, 691, 960
FbaI	TGATCA	2 cut(s)	630, 921
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	77, 120, 519, 545
FokI	GGATG	5 cut(s)	83, 580, 758, 881, 992
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	4 cut(s)	77, 120, 519, 545
FspBI	CTAG	2 cut(s)	528, 794
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	4 cut(s)	77, 120, 519, 545
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	3 cut(s)	79, 119, 616
HapII	CCGG	1 cut(s)	819
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	5 cut(s)	386, 431, 565, 695, 964
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	2 cut(s)	55, 1075
HindII	GTYRAC	2 cut(s)	55, 1075
HinfI	GANTC	6 cut(s)	349, 379, 705, 878, 1044, 1064
HpaII	CCGG	1 cut(s)	819
Hpy166II	GTNNAC	4 cut(s)	55, 388, 713, 1075
Hpy188I	TCNGA	5 cut(s)	200, 473, 635, 757, 972
Hpy188III	TCNNGA	5 cut(s)	34, 167, 346, 353, 557
Hpy8I	GTNNAC	4 cut(s)	55, 388, 713, 1075
Hpy99I	CGWCG	2 cut(s)	70, 191
HpyAV	CCTTC	5 cut(s)	91, 102, 627, 958, 1019
HpyCH4V	TGCA	7 cut(s)	518, 544, 593, 642, 677, 872, 940
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 319, 328, 622, 857
Hsp92II	CATG	5 cut(s)	386, 431, 565, 695, 964
HspAI	GCGC	1 cut(s)	521
Ksp22I	TGATCA	2 cut(s)	630, 921
Kzo9I	GATC	4 cut(s)	630, 886, 921, 981
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	9 cut(s)	35, 47, 242, 303, 498, 753, 832, 987, 998
Lsp1109I	GCAGC	2 cut(s)	530, 556
LweI	GCATC	5 cut(s)	274, 602, 686, 859, 1014
MaeI	CTAG	2 cut(s)	528, 794
MaeIII	GTNAC	4 cut(s)	212, 339, 557, 805
MalI	GATC	4 cut(s)	632, 888, 923, 983
MbiI	CCGCTC	1 cut(s)	193
MboI	GATC	4 cut(s)	630, 886, 921, 981
MboII	GAAGA	5 cut(s)	94, 381, 875, 881, 985
MhlI	GDGCHC	2 cut(s)	333, 418
MluCI	AATT	9 cut(s)	141, 239, 401, 450, 458, 462, 488, 846, 1035
MlyI	GAGTC	2 cut(s)	343, 887
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	709
MseI	TTAA	6 cut(s)	26, 207, 447, 461, 465, 845
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	819
MspR9I	CCNGG	1 cut(s)	819
MwoI	GCNNNNNNNGC	5 cut(s)	76, 319, 328, 622, 857
NciI	CCSGG	1 cut(s)	819
NdeII	GATC	4 cut(s)	630, 886, 921, 981
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	5 cut(s)	386, 431, 565, 695, 964
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	3 cut(s)	212, 339, 557
NsiI	ATGCAT	1 cut(s)	595
PacI	TTAATTAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	4 cut(s)	379, 705, 1044, 1064
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	4 cut(s)	78, 121, 520, 546
PleI	GAGTC	2 cut(s)	343, 886
PpsI	GAGTC	2 cut(s)	343, 886
PshBI	ATTAAT	2 cut(s)	461, 845
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	6 cut(s)	184, 302, 359, 389, 425, 729
RsaNI	GTAC	6 cut(s)	183, 301, 358, 388, 424, 728
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	6 cut(s)	26, 207, 447, 461, 465, 845
SatI	GCNGC	4 cut(s)	77, 120, 519, 545
Sau3AI	GATC	4 cut(s)	630, 886, 921, 981
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	2 cut(s)	302, 359
SchI	GAGTC	2 cut(s)	343, 887
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	2 cut(s)	333, 418
SfaNI	GCATC	5 cut(s)	274, 602, 686, 859, 1014
SfcI	CTRYAG	1 cut(s)	1078
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	5 cut(s)	167, 304, 344, 353, 731
SmoI	CTYRAG	5 cut(s)	167, 304, 344, 353, 731
Sse9I	AATT	9 cut(s)	141, 239, 401, 450, 458, 462, 488, 846, 1035
SsiI	CCGC	3 cut(s)	76, 120, 193
SspMI	CTAG	2 cut(s)	528, 794
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	817
TasI	AATT	9 cut(s)	141, 239, 401, 450, 458, 462, 488, 846, 1035
TatI	WGTACW	4 cut(s)	300, 357, 387, 727
TauI	GCSGC	2 cut(s)	79, 122
TfiI	GAWTC	4 cut(s)	379, 705, 1044, 1064
Tru1I	TTAA	6 cut(s)	26, 207, 447, 461, 465, 845
Tru9I	TTAA	6 cut(s)	26, 207, 447, 461, 465, 845
TseFI	GTSAC	3 cut(s)	212, 339, 557
TseI	GCWGC	2 cut(s)	518, 544
Tsp45I	GTSAC	3 cut(s)	212, 339, 557
TspDTI	ATGAA	3 cut(s)	371, 710, 977
TspGWI	ACGGA	2 cut(s)	758, 1042
VspI	ATTAAT	2 cut(s)	461, 845
XapI	RAATTY	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	2 cut(s)	528, 794
ZrmI	AGTACT	2 cut(s)	302, 359
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.