Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

45937586 .. 45940560

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCACGCCGTAAAAGTGACAACACATTTACGGCGCACTTTTATTGCATGTCGTAAAAGTGATGTGTATTTAGTTTTTTACGGTGCACATTTGATGCATGCCGTAAATATTATAACACATTTACGGCACACTTATATTGCACGCCGTAAAAGTGGTCCTTTCAAGAGGTACGGTGAGGACTACGGCAAGCTTGTTGTCATCGTCGACGTCATTGACCAGAACAGAGCCTGTGTTGCAACTGCTTTACCGCTTATGTTCACTCAGAAGGGACTAATTATTGGACGCTTTCCGCGCAGACGTCCCATTTTGGAAAAGCTTAGTAATTTGTTTCTCATACATTTGATTTGGCATGGATGCATGAGTGGTGCTACTGATGTGAAATTGGTACACCAAATTTTTTTTTTTATTTCTTTTAAAACATTATTTACGGCATGCAAAGTATGCCTTAAATGGGAACTCAATCGCTCTTTTACGGCACACATTATACTCCTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

165

Amino Acids

19.15

Weight (kDa)

10.27

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AatII	GACGTC	2 cut(s)	210, 301
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	292
AciI	CCGC	2 cut(s)	248, 290
AcsI	RAATTY	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	207, 298
AfaI	GTAC	2 cut(s)	170, 387
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	2 cut(s)	190, 316
AluI	AGCT	2 cut(s)	190, 316
Alw21I	GWGCWC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	393
AspLEI	GCGC	2 cut(s)	36, 294
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BceAI	ACGGC	7 cut(s)	47, 86, 129, 140, 199, 444, 489
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmsI	GCATC	2 cut(s)	84, 344
BsaHI	GRCGYC	2 cut(s)	207, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	282, 285
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	282, 285
Bsp1286I	GDGCHC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	248, 290
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	292
BssNI	GRCGYC	2 cut(s)	207, 298
Bst4CI	ACNGT	2 cut(s)	83, 173
BstACI	GRCGYC	2 cut(s)	207, 298
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	5 cut(s)	6, 99, 142, 188, 433
BstDEI	CTNAG	2 cut(s)	261, 317
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	36, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 291, 441
BstNSI	RCATGY	3 cut(s)	51, 101, 435
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	359
Cac8I	GCNNGC	5 cut(s)	6, 99, 142, 188, 433
CaiI	CAGNNNCTG	1 cut(s)	228
CfoI	GCGC	2 cut(s)	36, 294
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	169, 386
CviAII	CATG	5 cut(s)	48, 98, 350, 358, 432
CviJI	RGCY	3 cut(s)	190, 227, 316
CviKI_1	RGCY	3 cut(s)	190, 227, 316
CviQI	GTAC	2 cut(s)	169, 386
DdeI	CTNAG	2 cut(s)	261, 317
DraI	TTTAAA	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	155
EcoT22I	ATGCAT	2 cut(s)	99, 359
FaeI	CATG	5 cut(s)	51, 101, 353, 361, 435
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 429, 461
FaqI	GGGAC	2 cut(s)	282, 285
FatI	CATG	5 cut(s)	47, 97, 349, 357, 431
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	1 cut(s)	366
GlaI	GCGC	2 cut(s)	35, 293
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	36, 294
Hin1I	GRCGYC	2 cut(s)	207, 298
Hin1II	CATG	5 cut(s)	51, 101, 353, 361, 435
Hin6I	GCGC	2 cut(s)	34, 292
HinP1I	GCGC	2 cut(s)	34, 292
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	2 cut(s)	188, 314
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	4 cut(s)	86, 205, 258, 388
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	4 cut(s)	86, 205, 258, 388
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	2 cut(s)	83, 173
HpyCH4IV	ACGT	2 cut(s)	207, 298
HpyCH4V	TGCA	8 cut(s)	4, 47, 86, 97, 140, 236, 357, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 291, 441
HpyF3I	CTNAG	2 cut(s)	261, 317
HpySE526I	ACGT	2 cut(s)	207, 298
Hsp92I	GRCGYC	2 cut(s)	207, 298
Hsp92II	CATG	5 cut(s)	51, 101, 353, 361, 435
HspAI	GCGC	2 cut(s)	34, 292
LpnPI	CCDG	2 cut(s)	230, 241
LweI	GCATC	2 cut(s)	84, 344
MaeII	ACGT	2 cut(s)	207, 298
MaeIII	GTNAC	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	4 cut(s)	273, 322, 380, 393
MnlI	CCTC	2 cut(s)	159, 169
Mph1103I	ATGCAT	2 cut(s)	99, 359
MseI	TTAA	3 cut(s)	414, 447, 492
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	233, 291, 441
NlaIII	CATG	5 cut(s)	51, 101, 353, 361, 435
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	2 cut(s)	99, 359
NspI	RCATGY	3 cut(s)	51, 101, 435
PaeI	GCATGC	2 cut(s)	101, 435
PsiI	TTATAA	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	170, 387
RsaNI	GTAC	2 cut(s)	169, 386
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	3 cut(s)	414, 447, 492
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	170, 192, 210, 301, 318
SfaNI	GCATC	2 cut(s)	84, 344
SgrDI	CGTCGACG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	155
SphI	GCATGC	2 cut(s)	101, 435
Sse9I	AATT	4 cut(s)	273, 322, 380, 393
SsiI	CCGC	2 cut(s)	248, 290
SspI	AATATT	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	83, 173
TaiI	ACGT	2 cut(s)	210, 301
TaqI	TCGA	1 cut(s)	204
TasI	AATT	4 cut(s)	273, 322, 380, 393
Tru1I	TTAA	3 cut(s)	414, 447, 492
Tru9I	TTAA	3 cut(s)	414, 447, 492
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	3 cut(s)	51, 101, 435
XmiI	GTMKAC	1 cut(s)	204
ZraI	GACGTC	2 cut(s)	208, 299
Zsp2I	ATGCAT	2 cut(s)	99, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.