Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

12625754 .. 12626918

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1133000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAAACAGAAGAATAATCCGCCATCAAGAACTAGACAAGGCGGAGAACGAATGGAATAAACTGGAAGGCGTCGGCGAAAAACAAGAGCAAACAGTAAGGCGTCTGGAAACAACGGCGATGCTGCTGGTTTGCGGTTATATCTACCTTCAAAGCTTCATATTCCATTCTGTTAGCCACAATCCAAACTTGTCGTGCGAATTCTGGTGGGCGCCCTTCACCCTCTCGTGTCTGATTTGCGTCGTCTTCGCCATCCCCTTCAAGAGTTTCGTCACGAAATGGGAGCGTACGCAACGTTATTTCGAGATCAATTTTCTTAAGCAAGACTTAGTTCACCTACAAATTGTGATTTTCTCCTCCTCGGATGATCGGCAGCTGGAGCAGCAGCAGCCGCCGCCGCAGCAGGAGAAATTGAGGAGCGATAGTGCGAAAACGTATCAGAGGCGTGCGTTCATCTGCCTGGTTTCTTTAGCTCTTGTTGCGTACACAGTTGTTGTGTTAACGGCATGTCGATCGATTCCCTGTCACAGAATTGGCACTCATGTTTCCATTCCTCCTCTCTCTTTACAAAAGGAGAAAAAGGGGAAGGTGTTAGAGGAGGAGTCTTGTCTAAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

24.09

Weight (kDa)

8.78

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	6 cut(s)	22, 44, 135, 392, 395, 398
AclI	AACGTT	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	3 cut(s)	72, 103, 212
AfaI	GTAC	2 cut(s)	289, 485
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	152, 262
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	3 cut(s)	156, 376, 473
AluI	AGCT	3 cut(s)	156, 376, 473
ApeKI	GCWGC	6 cut(s)	124, 373, 382, 385, 388, 400
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	211, 326
BanI	GGYRCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	6 cut(s)	111, 385, 394, 397, 400, 412
BccI	CCATC	2 cut(s)	33, 260
BceAI	ACGGC	2 cut(s)	132, 519
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciT130I	CCWGG	1 cut(s)	461
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	215
BfrI	CTTAAG	1 cut(s)	317
BisI	GCNGC	9 cut(s)	125, 374, 383, 386, 389, 392, 395, 398, 401
BlsI	GCNGC	9 cut(s)	126, 375, 384, 387, 390, 393, 396, 399, 402
Bme1390I	CCNGG	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	515
BsaHI	GRCGYC	3 cut(s)	72, 103, 212
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	2 cut(s)	252, 370
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	6 cut(s)	346, 349, 430, 546, 611, 614
BseXI	GCAGC	6 cut(s)	111, 385, 394, 397, 400, 412
Bsh1285I	CGRYCG	1 cut(s)	515
BshNI	GGYRCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	515
BsiEI	CGRYCG	1 cut(s)	515
BsiWI	CGTACG	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	306, 367, 512
BspACI	CCGC	6 cut(s)	22, 44, 135, 392, 395, 398
BspDI	ATCGAT	1 cut(s)	515
BspLI	GGNNCC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	3 cut(s)	306, 367, 512
BssNI	GRCGYC	3 cut(s)	72, 103, 212
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	97, 490
BstACI	GRCGYC	3 cut(s)	72, 103, 212
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	328, 611
BstF5I	GGATG	2 cut(s)	252, 370
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	309, 370, 515
BstMBI	GATC	3 cut(s)	306, 367, 512
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	8 cut(s)	379, 382, 388, 391, 394, 397, 400, 479
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	459
BstV1I	GCAGC	6 cut(s)	111, 385, 394, 397, 400, 412
BstV2I	GAAGAC	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	252, 370
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	515
CseI	GACGC	3 cut(s)	61, 92, 229
Csp6I	GTAC	2 cut(s)	288, 484
CviAII	CATG	2 cut(s)	507, 542
CviJI	RGCY	5 cut(s)	156, 177, 376, 391, 473
CviKI_1	RGCY	5 cut(s)	156, 177, 376, 391, 473
CviQI	GTAC	2 cut(s)	288, 484
DdeI	CTNAG	2 cut(s)	328, 611
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	3 cut(s)	308, 369, 514
DpnII	GATC	3 cut(s)	306, 367, 512
EciI	GGCGGA	2 cut(s)	11, 59
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	459
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
FaeI	CATG	2 cut(s)	510, 545
FaiI	YATR	4 cut(s)	141, 161, 508, 543
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	2 cut(s)	506, 541
Fnu4HI	GCNGC	9 cut(s)	125, 374, 383, 386, 389, 392, 395, 398, 401
FokI	GGATG	2 cut(s)	239, 377
Fsp4HI	GCNGC	9 cut(s)	125, 374, 383, 386, 389, 392, 395, 398, 401
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	9 cut(s)	125, 374, 383, 386, 389, 392, 395, 398, 401
GsuI	CTGGAG	1 cut(s)	398
HaeII	RGCGCY	1 cut(s)	215
HgaI	GACGC	3 cut(s)	61, 92, 229
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	3 cut(s)	72, 103, 212
Hin1II	CATG	2 cut(s)	510, 545
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	517, 602
HpaI	GTTAAC	1 cut(s)	501
HphI	GGTGA	2 cut(s)	211, 326
Hpy166II	GTNNAC	3 cut(s)	334, 486, 501
Hpy188I	TCNGA	3 cut(s)	234, 364, 441
Hpy188III	TCNNGA	5 cut(s)	29, 107, 262, 274, 304
Hpy8I	GTNNAC	3 cut(s)	334, 486, 501
Hpy99I	CGWCG	2 cut(s)	77, 245
HpyAV	CCTTC	5 cut(s)	62, 158, 226, 268, 580
HpyCH4III	ACNGT	2 cut(s)	97, 490
HpyCH4IV	ACGT	2 cut(s)	295, 434
HpyF10VI	GCNNNNNNNGC	8 cut(s)	379, 382, 388, 391, 394, 397, 400, 479
HpyF3I	CTNAG	2 cut(s)	328, 611
HpySE526I	ACGT	2 cut(s)	295, 434
Hsp92I	GRCGYC	3 cut(s)	72, 103, 212
Hsp92II	CATG	2 cut(s)	510, 545
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	306, 367, 512
LmnI	GCTCC	3 cut(s)	283, 379, 417
LpnPI	CCDG	9 cut(s)	50, 92, 113, 190, 362, 389, 446, 473, 535
Lsp1109I	GCAGC	6 cut(s)	111, 385, 394, 397, 400, 412
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	295, 434
MaeIII	GTNAC	2 cut(s)	271, 524
MalI	GATC	3 cut(s)	308, 369, 514
MboI	GATC	3 cut(s)	306, 367, 512
MboII	GAAGA	2 cut(s)	24, 238
MluCI	AATT	5 cut(s)	200, 310, 342, 410, 531
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	611
MnlI	CCTC	9 cut(s)	233, 367, 370, 408, 435, 564, 567, 589, 592
MseI	TTAA	2 cut(s)	318, 500
MspA1I	CMGCKG	1 cut(s)	376
MspCI	CTTAAG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	8 cut(s)	379, 382, 388, 391, 394, 397, 400, 479
NarI	GGCGCC	1 cut(s)	212
NdeII	GATC	3 cut(s)	306, 367, 512
NlaIII	CATG	2 cut(s)	510, 545
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	271, 524
NspI	RCATGY	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	517
Pfl23II	CGTACG	1 cut(s)	287
PkrI	GCNGC	9 cut(s)	126, 375, 384, 387, 390, 393, 396, 399, 402
Ple19I	CGATCG	1 cut(s)	515
PleI	GAGTC	1 cut(s)	610
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	610
Psp1406I	AACGTT	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspLI	CGTACG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	213
PvuI	CGATCG	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	289, 485
RsaNI	GTAC	2 cut(s)	288, 484
SaqAI	TTAA	2 cut(s)	318, 500
SatI	GCNGC	9 cut(s)	125, 374, 383, 386, 389, 392, 395, 398, 401
Sau3AI	GATC	3 cut(s)	306, 367, 512
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	461
SetI	ASST	8 cut(s)	150, 158, 298, 339, 378, 437, 475, 591
SfaNI	GCATC	1 cut(s)	111
SfoI	GGCGCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	200, 310, 342, 410, 531
SsiI	CCGC	6 cut(s)	22, 44, 135, 392, 395, 398
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	97, 490
TaiI	ACGT	2 cut(s)	298, 437
TaqI	TCGA	3 cut(s)	303, 511, 515
TasI	AATT	5 cut(s)	200, 310, 342, 410, 531
TauI	GCSGC	3 cut(s)	394, 397, 400
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	318, 500
Tru9I	TTAA	2 cut(s)	318, 500
TseFI	GTSAC	2 cut(s)	271, 524
TseI	GCWGC	6 cut(s)	124, 373, 382, 385, 388, 400
Tsp45I	GTSAC	2 cut(s)	271, 524
TspDTI	ATGAA	2 cut(s)	148, 442
Vha464I	CTTAAG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	510
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.