Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

2487451 .. 2488008

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAACTTAAAAGAGTTCGAGGAAAGCTTCAAGGAACTGAGAATCATCAACGAAAAGCAAGAAAAACGTGTATGGTACCACGAGACAAGAGCTCAGAACTTAAAAATCGCTTATGTTCTGCTGCAAGGCTTGTTTTCCATAGGGATTGTACTTTCCTCGTCGTCACCACCGTCTAGTACTCCCAGAAATCAATGGTGGGTTCCCTTCTCCATGATACTAGTTTCATCTGTAATCTTCTTCATGGCTTTCCTAGATGCTGTGACTATGTTTTGTAGGACCCAGTACCATCTAGATATGAACTATATGGAGCAAGACCTCATATTCAAGAAGATACAAGAAGCCAAACACCCACCTGCAGCTAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGCGGTCATGAACAAGAAGTGCCTACAGAGCATGAAATTGTAAGACCTGATCTCTTTCAGCTCTTCAAACGCAAGGGTTATATTTACTTTACAGCTCTGGGTTTGTTCGCTTTCACTGTAATTCGGTTATACGCTTGCCGCTTGTTCTACATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

186

Amino Acids

21.9

Weight (kDa)

9.08

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	2 cut(s)	402, 538
AfaI	GTAC	4 cut(s)	77, 150, 178, 284
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	31, 325, 466
AhlI	ACTAGT	1 cut(s)	217
AluBI	AGCT	6 cut(s)	27, 92, 359, 370, 460, 494
AluI	AGCT	6 cut(s)	27, 92, 359, 370, 460, 494
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	121, 356, 399
Asp718I	GGTACC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	108, 368, 411
BccI	CCATC	2 cut(s)	294, 389
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	5 cut(s)	174, 218, 251, 290, 360
BfmI	CTRYAG	2 cut(s)	354, 423
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	122, 357, 400, 538
BlsI	GCNGC	4 cut(s)	123, 358, 401, 539
BmcAI	AGTACT	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	77, 201, 278
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	29, 107, 385
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	108, 368, 411
BsgI	GTGCAG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	2 cut(s)	402, 538
BspCNI	CTCAG	3 cut(s)	30, 106, 384
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	77, 201, 278
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	448
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	171, 517
Bst6I	CTCTTC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	38, 93, 371
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	354, 423
BstV1I	GCAGC	3 cut(s)	108, 368, 411
BtsIMutI	CAGTG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	4 cut(s)	76, 149, 177, 283
CviAII	CATG	4 cut(s)	211, 241, 407, 431
CviJI	RGCY	9 cut(s)	27, 92, 129, 245, 341, 359, 370, 460, 494
CviKI_1	RGCY	9 cut(s)	27, 92, 129, 245, 341, 359, 370, 460, 494
CviQI	GTAC	4 cut(s)	76, 149, 177, 283
DdeI	CTNAG	3 cut(s)	38, 93, 371
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	4 cut(s)	214, 244, 410, 434
FatI	CATG	4 cut(s)	210, 240, 406, 430
Fnu4HI	GCNGC	4 cut(s)	122, 357, 400, 538
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	4 cut(s)	122, 357, 400, 538
FspBI	CTAG	5 cut(s)	174, 218, 251, 290, 360
GluI	GCNGC	4 cut(s)	122, 357, 400, 538
Hin1II	CATG	4 cut(s)	214, 244, 410, 434
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	4 cut(s)	290, 325, 385, 407
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	171, 517
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	124, 356, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	3 cut(s)	38, 93, 371
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	214, 244, 410, 434
KpnI	GGTACC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	448
LguI	GCTCTTC	1 cut(s)	467
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	5 cut(s)	196, 293, 366, 459, 482
Lsp1109I	GCAGC	3 cut(s)	108, 368, 411
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	5 cut(s)	174, 218, 251, 290, 360
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	162, 259
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	4 cut(s)	226, 229, 340, 454
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	2 cut(s)	435, 519
MnlI	CCTC	3 cut(s)	13, 166, 326
MseI	TTAA	2 cut(s)	8, 101
MspA1I	CMGCKG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	214, 244, 410, 434
NlaIV	GGNNCC	3 cut(s)	77, 201, 278
NmuCI	GTSAC	2 cut(s)	162, 259
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	123, 358, 401, 539
PpuMI	RGGWCCY	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	77, 201, 278
PspPI	GGNCC	1 cut(s)	276
PspPPI	RGGWCCY	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	4 cut(s)	77, 150, 178, 284
RsaNI	GTAC	4 cut(s)	76, 149, 177, 283
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	8, 101
SatI	GCNGC	4 cut(s)	122, 357, 400, 538
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	276
ScaI	AGTACT	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	354, 423
SinI	GGWCC	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	2 cut(s)	435, 519
SsiI	CCGC	2 cut(s)	402, 538
SspMI	CTAG	5 cut(s)	174, 218, 251, 290, 360
SstI	GAGCTC	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	171, 517
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	435, 519
TatI	WGTACW	2 cut(s)	148, 176
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	8, 101
Tru9I	TTAA	2 cut(s)	8, 101
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	2 cut(s)	162, 259
TseI	GCWGC	3 cut(s)	121, 356, 399
Tsp45I	GTSAC	2 cut(s)	162, 259
TspDTI	ATGAA	6 cut(s)	17, 213, 229, 311, 423, 447
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	276
XbaI	TCTAGA	1 cut(s)	289
XspI	CTAG	5 cut(s)	174, 218, 251, 290, 360
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.