Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Forward (+)

38732567 .. 38735024

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G464100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATTTTCAATCAAAAGAACAAGAGAGTGAATCGAATAAGCTGAAAGAGAGGATCGAAAAACTAGGCAAAACAGTGACGGATCTGGAAACAGCTATGATGCTGCTGGTCATGGGTTATATTTTCTTCCAAGGCGCCATATTCGCGTCTGTTTTCCACAATCCCAGCAACATGTCGTGCGAGTATTGGTGGATTCCTTTCTCCCTCTCCTGTCTGATTTGCGTTATCTTCGCCATCCCATTTCAGTCTTATGTCGCAAATTGGGAGCGAACAAAACATCATCACTCCTCGGCCTTTCTAAAGCAAGATTTGCTTAACCACAAGATGGTCACTTCCTCCTCAGTCGAAACCAGGATGTATGATCAGCCGCAGTCGCAGTCGCCGCCGCAGCTGCAGGGAATATTGAAGAGCGATAGGGCACAAGTTTACCAGAGAAACGCATTCATATACCTGGTTTCTTTAGCCCTTCTGGCCTACACCATACTTATTTTGAAGGCATGCGGATCCATTCCCTGCCACGGAGATGCTACACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.31

Weight (kDa)

6.99

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccII	CGCG	1 cut(s)	146
AciI	CCGC	4 cut(s)	368, 383, 386, 501
AclWI	GGATC	4 cut(s)	62, 90, 498, 511
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	325, 518
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	11, 406, 493
AjnI	CCWGG	2 cut(s)	350, 450
AluBI	AGCT	3 cut(s)	43, 95, 391
AluI	AGCT	3 cut(s)	43, 95, 391
AlwI	GGATC	4 cut(s)	62, 90, 498, 511
AoxI	GGCC	2 cut(s)	291, 471
ApeKI	GCWGC	3 cut(s)	103, 388, 391
AspLEI	GCGC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	90, 378, 400
BccI	CCATC	2 cut(s)	242, 319
BciT130I	CCWGG	2 cut(s)	352, 452
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	2 cut(s)	65, 535
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	6 cut(s)	104, 368, 383, 386, 389, 392
BlsI	GCNGC	6 cut(s)	105, 369, 384, 387, 390, 393
Bme1390I	CCNGG	2 cut(s)	352, 452
BmiI	GGNNCC	2 cut(s)	136, 505
BmrFI	CCNGG	2 cut(s)	352, 452
BmsI	GCATC	2 cut(s)	90, 514
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	130, 288, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 518
BseBI	CCWGG	2 cut(s)	352, 452
BseDI	CCNNGG	3 cut(s)	130, 288, 517
BseGI	GGATG	2 cut(s)	234, 360
BseLI	CCNNNNNNNGG	2 cut(s)	325, 518
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	277, 328
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	90, 378, 400
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	293, 473
BshNI	GGYRCC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	325, 518
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	293, 473
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	4 cut(s)	54, 82, 361, 503
BspACI	CCGC	4 cut(s)	368, 383, 386, 501
BspANI	GGCC	2 cut(s)	293, 473
BspCNI	CTCAG	1 cut(s)	353
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	136, 505
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	4 cut(s)	62, 90, 498, 511
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	130, 288, 517
BssMI	GATC	4 cut(s)	54, 82, 361, 503
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	130
Bst2UI	CCWGG	2 cut(s)	352, 452
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	234, 360
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	57, 85, 364, 506
BstMBI	GATC	4 cut(s)	54, 82, 361, 503
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 310, 373, 382, 388, 391, 470
BstNI	CCWGG	2 cut(s)	352, 452
BstNSI	RCATGY	2 cut(s)	175, 501
BstSCI	CCNGG	2 cut(s)	350, 450
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	90, 378, 400
BstX2I	RGATCY	2 cut(s)	82, 503
BstYI	RGATCY	2 cut(s)	82, 503
BsuRI	GGCC	2 cut(s)	293, 473
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	234, 360
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	499
CfoI	GCGC	1 cut(s)	137
CseI	GACGC	1 cut(s)	135
CsiI	ACCWGGT	1 cut(s)	450
CviAII	CATG	3 cut(s)	112, 172, 498
CviJI	RGCY	7 cut(s)	43, 95, 293, 367, 391, 464, 473
CviKI_1	RGCY	7 cut(s)	43, 95, 293, 367, 391, 464, 473
DdeI	CTNAG	1 cut(s)	340
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	4 cut(s)	56, 84, 363, 505
DpnII	GATC	4 cut(s)	54, 82, 361, 503
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	350, 450
EcoT14I	CCWWGG	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	3 cut(s)	115, 175, 501
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	3 cut(s)	111, 171, 497
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	6 cut(s)	104, 368, 383, 386, 389, 392
FokI	GGATG	2 cut(s)	221, 367
Fsp4HI	GCNGC	6 cut(s)	104, 368, 383, 386, 389, 392
FspBI	CTAG	2 cut(s)	65, 535
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	104, 368, 383, 386, 389, 392
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	293, 473
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	115, 175, 501
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	32, 193
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	476, 487
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 310, 373, 382, 388, 391, 470
HpyF3I	CTNAG	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	115, 175, 501
HspAI	GCGC	1 cut(s)	135
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	54, 82, 361, 503
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	90, 378, 400
LweI	GCATC	2 cut(s)	90, 514
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	2 cut(s)	65, 535
MaeIII	GTNAC	2 cut(s)	76, 328
MalI	GATC	4 cut(s)	56, 84, 363, 505
MboI	GATC	4 cut(s)	54, 82, 361, 503
MboII	GAAGA	3 cut(s)	118, 220, 418
MflI	RGATCY	2 cut(s)	82, 503
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	259
Mly113I	GGCGCC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	45, 215, 298, 346, 349
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	352, 452
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	2 cut(s)	352, 452
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	7 cut(s)	143, 310, 373, 382, 388, 391, 470
NarI	GGCGCC	1 cut(s)	135
NdeII	GATC	4 cut(s)	54, 82, 361, 503
NlaIII	CATG	3 cut(s)	115, 175, 501
NlaIV	GGNNCC	2 cut(s)	136, 505
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	76, 328
NspI	RCATGY	2 cut(s)	175, 501
PaeI	GCATGC	1 cut(s)	501
PciI	ACATGT	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	401
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	32, 193
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	6 cut(s)	105, 369, 384, 387, 390, 393
PluTI	GGCGCC	1 cut(s)	138
PscI	ACATGT	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	350, 450
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	350, 450
PspN4I	GGNNCC	2 cut(s)	136, 505
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	2 cut(s)	82, 503
PvuII	CAGCTG	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	6 cut(s)	104, 368, 383, 386, 389, 392
Sau3AI	GATC	4 cut(s)	54, 82, 361, 503
ScrFI	CCNGG	2 cut(s)	352, 452
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	4 cut(s)	45, 97, 393, 453
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	90, 514
SfcI	CTRYAG	1 cut(s)	392
SfoI	GGCGCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	368, 383, 386, 501
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	2 cut(s)	65, 535
StyD4I	CCNGG	2 cut(s)	350, 450
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	3 cut(s)	35, 57, 345
TasI	AATT	1 cut(s)	259
TauI	GCSGC	3 cut(s)	370, 385, 388
TfiI	GAWTC	2 cut(s)	32, 193
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	2 cut(s)	76, 328
TseI	GCWGC	3 cut(s)	103, 388, 391
Tsp45I	GTSAC	2 cut(s)	76, 328
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	2 cut(s)	95, 534
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	325
XceI	RCATGY	2 cut(s)	175, 501
XspI	CTAG	2 cut(s)	65, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.