Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Forward (+)

65746295 .. 65746851

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAACTTAAAAGAGCTCGAGGAAAGCTTCAAGGAACTGAGAATCATCAACGAAAAGCAAGAAAAACGTGTATGGTACCACGAGACGAGAGCTCAGAACTTAACAATCGCTTATGTTCTGCTGCAAGGCTTGTTTTCCATAGGGATTGTACTTTCCTCGTCGTCACCACCGTCTAGTACTCCCAGAAATCAATGGTGGGTTCCCTTCTCCATGATACTAGTTTCATCTGTAATCTTCTTCATGGCTTTCCTAGATGCTGTGACATCCAAACACCCACCTGCAGCTAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGTGGTCATGAACAAGAAGTGCCTACAGAGCATGAAATTGCAAGACCTGGTGTCTTTAAGCTCTTCAAACGCAAGGTTTATATTTACTTTACAGCTCTGGGTTTGTTCGCTTTCACTGTAATTCAGTTATACGCTTGCCGCTTGTTCTATATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

160

Amino Acids

18.57

Weight (kDa)

9.39

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	1 cut(s)	463
AfaI	GTAC	3 cut(s)	77, 150, 178
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	31, 391
AhdI	GACNNNNNGTC	1 cut(s)	374
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	7 cut(s)	16, 27, 92, 284, 295, 385, 419
AluI	AGCT	7 cut(s)	16, 27, 92, 284, 295, 385, 419
Alw21I	GWGCWC	2 cut(s)	18, 94
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	121, 281
Asp718I	GGTACC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	75
BanII	GRGCYC	2 cut(s)	18, 94
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	18, 94
BbvI	GCAGC	2 cut(s)	108, 293
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	4 cut(s)	174, 218, 251, 285
BfmI	CTRYAG	2 cut(s)	279, 348
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	122, 282, 463
BlsI	GCNGC	3 cut(s)	123, 283, 464
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	372
BmeRI	GACNNNNNGTC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	77, 201
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	29, 107, 310
BseXI	GCAGC	2 cut(s)	108, 293
BsgI	GTGCAG	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	18, 94
BsiHKCI	CYCGRG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	18, 94
BspACI	CCGC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	30, 106, 309
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	77, 201
BspMAI	CTGCAG	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	171, 442
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	3 cut(s)	38, 93, 296
BstF5I	GGATG	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	279, 348
BstV1I	GCAGC	2 cut(s)	108, 293
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	331, 438
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	460
CciI	TCATGA	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	76, 149, 177
CviAII	CATG	4 cut(s)	211, 241, 332, 356
CviJI	RGCY	9 cut(s)	16, 27, 92, 129, 245, 284, 295, 385, 419
CviKI_1	RGCY	9 cut(s)	16, 27, 92, 129, 245, 284, 295, 385, 419
CviQI	GTAC	3 cut(s)	76, 149, 177
DdeI	CTNAG	3 cut(s)	38, 93, 296
DriI	GACNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	392
Eam1105I	GACNNNNNGTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	392
Ecl136II	GAGCTC	2 cut(s)	16, 92
Eco24I	GRGCYC	2 cut(s)	18, 94
Eco53kI	GAGCTC	2 cut(s)	16, 92
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	2 cut(s)	16, 92
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	18, 94
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	214, 244, 335, 359
FatI	CATG	4 cut(s)	210, 240, 331, 355
Fnu4HI	GCNGC	3 cut(s)	122, 282, 463
FokI	GGATG	1 cut(s)	250
FriOI	GRGCYC	2 cut(s)	18, 94
Fsp4HI	GCNGC	3 cut(s)	122, 282, 463
FspBI	CTAG	4 cut(s)	174, 218, 251, 285
GluI	GCNGC	3 cut(s)	122, 282, 463
Hin1II	CATG	4 cut(s)	214, 244, 335, 359
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	310, 332
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	171, 442
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	124, 281, 324, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	38, 93, 296
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	214, 244, 335, 359
KpnI	GGTACC	1 cut(s)	79
LguI	GCTCTTC	1 cut(s)	392
LpnPI	CCDG	5 cut(s)	196, 291, 357, 384, 407
Lsp1109I	GCAGC	2 cut(s)	108, 293
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	4 cut(s)	174, 218, 251, 285
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	2 cut(s)	162, 259
MboII	GAAGA	3 cut(s)	226, 229, 379
MhlI	GDGCHC	2 cut(s)	18, 94
MluCI	AATT	2 cut(s)	360, 444
MnlI	CCTC	2 cut(s)	13, 166
MseI	TTAA	3 cut(s)	8, 101, 381
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	214, 244, 335, 359
NlaIV	GGNNCC	2 cut(s)	77, 201
NmuCI	GTSAC	2 cut(s)	162, 259
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	123, 283, 464
PsiI	TTATAA	1 cut(s)	291
Psp124BI	GAGCTC	2 cut(s)	18, 94
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	77, 201
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	3 cut(s)	77, 150, 178
RsaNI	GTAC	3 cut(s)	76, 149, 177
SacI	GAGCTC	2 cut(s)	18, 94
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	8, 101, 381
SatI	GCNGC	3 cut(s)	122, 282, 463
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	18, 94
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	2 cut(s)	279, 348
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	2 cut(s)	360, 444
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	4 cut(s)	174, 218, 251, 285
SstI	GAGCTC	2 cut(s)	18, 94
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	171, 442
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	360, 444
TatI	WGTACW	2 cut(s)	148, 176
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	3 cut(s)	8, 101, 381
Tru9I	TTAA	3 cut(s)	8, 101, 381
TscAI	CASTG	2 cut(s)	331, 445
TseFI	GTSAC	2 cut(s)	162, 259
TseI	GCWGC	2 cut(s)	121, 281
Tsp45I	GTSAC	2 cut(s)	162, 259
TspDTI	ATGAA	5 cut(s)	17, 213, 229, 348, 372
TspRI	CASTG	2 cut(s)	331, 445
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	4 cut(s)	174, 218, 251, 285
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.