RLG00000003047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004870
Physical Location & Seq
Reverse (-)
43613792 .. 43617003
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003047

Sequence Viewer

Length: 531 bp
ATGGCTCCTCCTGCACTAGAGGACTTGGAGACCAAACAGAAGAAACTGGATTCTATAGGCAAAAAGCAAGAGAAAACAGCAAGATATTTTGAAGCCACAACGATAAAGCTGGTCGGCAACTACATAATCTTCCAGGCAATAATTTTTCTGGCTGTTTCAAACCACAGTAAGCTCCCCTGTAAATATTGGTGGATTCCTTTCTGCCTTTCGTCCCTGGTTGCGGTCGTCTTTGCCATCACATTTAAGACATTCATCACCAATTGGGAGCGTACTCGATCTCACTACGACAAGAACTTCCTGCAGCGGGATTGGATTCATCACCAAATTGTCTTGTTTCCAATAAGAGAATCAAAAGGGCGATCCTCGGATCAATTAAAATTGCATGTTCATCAGCAACAACCGGAAATCTTGAAGCCTGCCGTTCCATTCTCTGTCATAACTAGTGAAGCTGGTGGAGCCAAATTGAATACGTACGTACAGTGTGAGAGTGGTGTATACTCTCATACGCGAGTCTTGACAGGACCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.2

Weight (kDa)

9.47

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 508
AciI CCGC 2 cut(s) 221, 304
AclWI GGATC 2 cut(s) 354, 375
AfaI GTAC 3 cut(s) 271, 473, 477
AfiI CCNNNNNNNGG 2 cut(s) 220, 304
AgsI TTSAA 4 cut(s) 92, 159, 412, 466
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 2 cut(s) 132, 213
AluBI AGCT 3 cut(s) 109, 172, 449
AluI AGCT 3 cut(s) 109, 172, 449
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 354, 375
ApeKI GCWGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 247, 311
AvaII GGWCC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 134, 215
BcoDI GTCTC 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 2 cut(s) 17, 441
BfmI CTRYAG 2 cut(s) 54, 299
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 134, 215
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 6, 457
BmrFI CCNGG 2 cut(s) 134, 215
BsaAI YACGTR 2 cut(s) 471, 475
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 213, 363
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 304
Bse1I ACTGG 1 cut(s) 51
BseBI CCWGG 2 cut(s) 134, 215
BseDI CCNNGG 2 cut(s) 213, 363
BseLI CCNNNNNNNGG 2 cut(s) 220, 304
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 401
BsiWI CGTACG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 220, 304
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 275, 359, 367
BspACI CCGC 2 cut(s) 221, 304
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 6, 457
BspMAI CTGCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 354, 375
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 213, 363
BssMI GATC 3 cut(s) 275, 359, 367
BssNAI GTATAC 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 134, 215
Bst4CI ACNGT 3 cut(s) 167, 480, 528
BstBAI YACGTR 2 cut(s) 471, 475
BstC8I GCNNGC 1 cut(s) 417
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 3 cut(s) 278, 362, 370
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 3 cut(s) 275, 359, 367
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 11, 455
BstNI CCWGG 2 cut(s) 134, 215
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 2 cut(s) 132, 213
BstSFI CTRYAG 2 cut(s) 54, 299
BstSNI TACGTA 2 cut(s) 471, 475
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 313
BstZ17I GTATAC 1 cut(s) 496
BtsIMutI CAGTG 2 cut(s) 485, 524
Cac8I GCNNGC 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 521
Csp6I GTAC 3 cut(s) 270, 472, 476
CviAII CATG 1 cut(s) 383
CviJI RGCY 8 cut(s) 5, 95, 109, 152, 172, 415, 449, 458
CviKI_1 RGCY 8 cut(s) 5, 95, 109, 152, 172, 415, 449, 458
CviQI GTAC 3 cut(s) 270, 472, 476
DpnI GATC 3 cut(s) 277, 361, 369
DpnII GATC 3 cut(s) 275, 359, 367
Eco105I TACGTA 2 cut(s) 471, 475
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 132, 213
FaeI CATG 1 cut(s) 386
FaiI YATR 6 cut(s) 56, 125, 384, 437, 496, 504
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 382
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 2 cut(s) 17, 441
GluI GCNGC 1 cut(s) 302
HapII CCGG 1 cut(s) 401
Hin1II CATG 1 cut(s) 386
HinfI GANTC 5 cut(s) 50, 193, 313, 347, 510
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 247, 311
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 409, 514
Hpy8I GTNNAC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 167, 480, 528
HpyCH4IV ACGT 2 cut(s) 470, 474
HpyCH4V TGCA 3 cut(s) 14, 301, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 455
HpySE526I ACGT 2 cut(s) 470, 474
Hsp92II CATG 1 cut(s) 386
Kzo9I GATC 3 cut(s) 275, 359, 367
LmnI GCTCC 4 cut(s) 10, 177, 265, 455
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 2 cut(s) 17, 441
MaeII ACGT 2 cut(s) 470, 474
MalI GATC 3 cut(s) 277, 361, 369
MboI GATC 3 cut(s) 275, 359, 367
MboII GAAGA 2 cut(s) 52, 121
MfeI CAATTG 1 cut(s) 259
MluCI AATT 6 cut(s) 141, 259, 324, 371, 377, 461
MlyI GAGTC 1 cut(s) 519
MnlI CCTC 3 cut(s) 13, 18, 373
MseI TTAA 2 cut(s) 243, 374
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 134, 215
MunI CAATTG 1 cut(s) 259
MvaI CCWGG 2 cut(s) 134, 215
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 2 cut(s) 11, 455
NdeII GATC 3 cut(s) 275, 359, 367
NlaIII CATG 1 cut(s) 386
NlaIV GGNNCC 2 cut(s) 6, 457
NspI RCATGY 1 cut(s) 386
PfeI GAWTC 4 cut(s) 50, 193, 313, 347
Pfl23II CGTACG 1 cut(s) 471
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
Ppu21I YACGTR 2 cut(s) 471, 475
Psp6I CCWGG 2 cut(s) 132, 213
PspGI CCWGG 2 cut(s) 132, 213
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 6, 457
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 303
RsaI GTAC 3 cut(s) 271, 473, 477
RsaNI GTAC 3 cut(s) 270, 472, 476
SaqAI TTAA 2 cut(s) 243, 374
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 3 cut(s) 275, 359, 367
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 2 cut(s) 134, 215
SetI ASST 5 cut(s) 111, 174, 451, 473, 477
SfcI CTRYAG 2 cut(s) 54, 299
SinI GGWCC 1 cut(s) 521
SnaBI TACGTA 2 cut(s) 471, 475
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 6 cut(s) 141, 259, 324, 371, 377, 461
SsiI CCGC 2 cut(s) 221, 304
SspI AATATT 1 cut(s) 185
SspMI CTAG 2 cut(s) 17, 441
StyD4I CCNGG 2 cut(s) 132, 213
TaaI ACNGT 3 cut(s) 167, 480, 528
TaiI ACGT 2 cut(s) 473, 477
TaqI TCGA 1 cut(s) 274
TasI AATT 6 cut(s) 141, 259, 324, 371, 377, 461
TfiI GAWTC 4 cut(s) 50, 193, 313, 347
Tru1I TTAA 2 cut(s) 243, 374
Tru9I TTAA 2 cut(s) 243, 374
TscAI CASTG 2 cut(s) 485, 531
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 241, 305, 377
TspRI CASTG 2 cut(s) 485, 531
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 17, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.