Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

2494641 .. 2495192

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACTTAGAAGAGCTCGAGGAAAGCTTCAAGGAACTGAGAATCACAACGAAAGGCAAGAAAAATGGGTATATATGGTACCACGAGACAAGAGCTCAGAACTTAAAAATCGCTTATGTTCTTCTGCAAGGCTTGTCTTTCATAGGGATTGTACAAGCACAAGGCTCATCCATGTCGTCAGCACCGTCTAGTACTCCAGAAATCAATGTGGGTTCTTTTCTCCGTGATACTATTTTCATCTGTATCATCTGTATCCTGGAGAAGGGAACCCATAAGACCCTTGCAATTTTCAAAACCGCATTTTGGTGCATACAAGATGAGGTTTTCATGAAACCTACAATGGGGGAAGTGGTGAGGATGCTGGAAGGATCGGTCGAAATCAACATCCCACCAATGGTCCAGACAGTTTTGGAGTTAATTGATGAAGGCTTACATCATGTGTGCAGAGCCATGAAGAGAGAGGTCAACAACCACTTCATCTCATTCACCATGATCAACACCCACCATTCATCTCAAGCTACATGTAGTTATTCCACAATGTCCCCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

6.37

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	78
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	1 cut(s)	376
AfaI	GTAC	3 cut(s)	80, 153, 193
AfiI	CCNNNNNNNGG	4 cut(s)	262, 303, 341, 394
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	31, 292
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	16, 27, 95, 518
AluI	AGCT	4 cut(s)	16, 27, 95, 518
Alw21I	GWGCWC	2 cut(s)	18, 97
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	364, 478
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	2 cut(s)	18, 97
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	18, 97
BciT130I	CCWGG	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	80, 268
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	180, 278
BpuEI	CTTGAG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 303, 341, 394
BseBI	CCWGG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	167, 363, 384
BseLI	CCNNNNNNNGG	4 cut(s)	262, 303, 341, 394
BseMII	CTCAG	2 cut(s)	29, 110
BsgI	GTGCAG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	18, 97
BsiHKCI	CYCGRG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	4 cut(s)	262, 303, 341, 394
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	18, 97
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	368, 492
BspACI	CCGC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	30, 109
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	80, 268
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	151
BssMI	GATC	2 cut(s)	368, 492
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	186, 406
Bst6I	CTCTTC	2 cut(s)	6, 449
BstAUI	TGTACA	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	7, 38, 96
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	167, 363, 384
BstKTI	GATC	2 cut(s)	371, 495
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	368, 492
BstMCI	CGRYCG	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	167, 363, 384
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	79, 152, 192
CviAII	CATG	6 cut(s)	172, 328, 437, 451, 490, 522
CviJI	RGCY	8 cut(s)	16, 27, 95, 132, 165, 429, 449, 518
CviKI_1	RGCY	8 cut(s)	16, 27, 95, 132, 165, 429, 449, 518
CviQI	GTAC	3 cut(s)	79, 152, 192
DdeI	CTNAG	3 cut(s)	7, 38, 96
DpnI	GATC	2 cut(s)	370, 494
DpnII	GATC	2 cut(s)	368, 492
Eam1104I	CTCTTC	2 cut(s)	6, 449
EarI	CTCTTC	2 cut(s)	6, 449
Ecl136II	GAGCTC	2 cut(s)	16, 95
Eco24I	GRGCYC	2 cut(s)	18, 97
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	2 cut(s)	16, 95
Eco88I	CYCGRG	1 cut(s)	17
EcoICRI	GAGCTC	2 cut(s)	16, 95
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	255
EcoT38I	GRGCYC	2 cut(s)	18, 97
FaeI	CATG	6 cut(s)	175, 331, 440, 454, 493, 525
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	6 cut(s)	171, 327, 436, 450, 489, 521
FbaI	TGATCA	1 cut(s)	492
FokI	GGATG	3 cut(s)	154, 370, 371
FriOI	GRGCYC	2 cut(s)	18, 97
FspBI	CTAG	1 cut(s)	189
GsuI	CTGGAG	2 cut(s)	180, 278
Hin1II	CATG	6 cut(s)	175, 331, 440, 454, 493, 525
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	364, 478
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	197, 328, 400
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	256, 359, 419
HpyCH4III	ACNGT	2 cut(s)	186, 406
HpyCH4V	TGCA	4 cut(s)	127, 284, 309, 444
HpyF3I	CTNAG	3 cut(s)	7, 38, 96
Hsp92II	CATG	6 cut(s)	175, 331, 440, 454, 493, 525
KpnI	GGTACC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	368, 492
LguI	GCTCTTC	1 cut(s)	6
LpnPI	CCDG	5 cut(s)	210, 242, 269, 347, 413
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	189
MalI	GATC	2 cut(s)	370, 494
MboI	GATC	2 cut(s)	368, 492
MboII	GAAGA	3 cut(s)	23, 113, 466
MhlI	GDGCHC	2 cut(s)	18, 97
MluCI	AATT	2 cut(s)	285, 417
MnlI	CCTC	4 cut(s)	13, 313, 348, 454
MseI	TTAA	2 cut(s)	104, 416
MslI	CAYNNNNRTG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	368, 492
NlaIII	CATG	6 cut(s)	175, 331, 440, 454, 493, 525
NlaIV	GGNNCC	2 cut(s)	80, 268
NspI	RCATGY	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	255
PscI	ACATGT	1 cut(s)	521
Psp124BI	GAGCTC	2 cut(s)	18, 97
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	80, 268
PspPI	GGNCC	1 cut(s)	397
PspXI	VCTCGAGB	1 cut(s)	17
RsaI	GTAC	3 cut(s)	80, 153, 193
RsaNI	GTAC	3 cut(s)	79, 152, 192
RseI	CAYNNNNRTG	1 cut(s)	304
SacI	GAGCTC	2 cut(s)	18, 97
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	104, 416
Sau3AI	GATC	2 cut(s)	368, 492
Sau96I	GGNCC	1 cut(s)	397
ScaI	AGTACT	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	18, 97
SetI	ASST	7 cut(s)	18, 29, 97, 324, 337, 465, 520
SfaNI	GCATC	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	17, 513
SmoI	CTYRAG	2 cut(s)	17, 513
Sse9I	AATT	2 cut(s)	285, 417
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	189
SstI	GAGCTC	2 cut(s)	18, 97
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	186, 406
TaqI	TCGA	2 cut(s)	18, 375
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	285, 417
TatI	WGTACW	2 cut(s)	151, 191
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	104, 416
Tru9I	TTAA	2 cut(s)	104, 416
TspDTI	ATGAA	9 cut(s)	17, 130, 226, 316, 344, 438, 466, 467, 498
TspGWI	ACGGA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	260
XceI	RCATGY	1 cut(s)	525
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	1 cut(s)	189
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.