Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022226.1

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

5169 .. 5654

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022226.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggtccacgagacaagagctcagaacttaacaatcgcttatgttctgctgcaaggcttgttttccatagggattgtactttcctcgtcgtcaccaccgtctagtactcccagaaatcaatggacccagtaccatctagatatgaaccatatggagcaggacctcatattcaagaagatacaagaagccaaacacccacctgcagctagttataagctcagtcattccatcaagatagaaaagtgcagtggtcatgaacaagaagtgcctacagagcatgaaattgcaagacctgatgtctttaagctcttcaaacgcaaggtttatatttactttacagctctgggtttgttcgctttcactgtaattcagttatacgcttgccgcttgttctatataaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

134

Amino Acids

15.54

Weight (kDa)

9.12

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	1 cut(s)	385
AfaI	GTAC	3 cut(s)	78, 106, 131
AgsI	TTSAA	2 cut(s)	172, 313
AhdI	GACNNNNNGTC	1 cut(s)	296
AluBI	AGCT	5 cut(s)	20, 206, 217, 307, 341
AluI	AGCT	5 cut(s)	20, 206, 217, 307, 341
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	49, 203
AspS9I	GGNCC	3 cut(s)	4, 123, 160
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	4, 123, 160
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	36, 215
BccI	CCATC	2 cut(s)	141, 236
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	3 cut(s)	102, 137, 207
BfmI	CTRYAG	2 cut(s)	201, 270
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	50, 204, 385
BlsI	GCNGC	3 cut(s)	51, 205, 386
BmcAI	AGTACT	1 cut(s)	106
Bme18I	GGWCC	3 cut(s)	4, 123, 160
BmeRI	GACNNNNNGTC	1 cut(s)	296
BmgT120I	GGNCC	3 cut(s)	4, 123, 160
BmiI	GGNNCC	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	35, 232
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	36, 215
BsgI	GTGCAG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	34, 231
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	205
BspMI	ACCTGC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	127
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	99, 364
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	21, 218
BstMAI	GTCTC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstSFI	CTRYAG	2 cut(s)	201, 270
BstV1I	GCAGC	2 cut(s)	36, 215
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	253, 360
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	4, 123, 160
Csp6I	GTAC	3 cut(s)	77, 105, 130
CviAII	CATG	2 cut(s)	254, 278
CviJI	RGCY	7 cut(s)	20, 57, 188, 206, 217, 307, 341
CviKI_1	RGCY	7 cut(s)	20, 57, 188, 206, 217, 307, 341
CviQI	GTAC	3 cut(s)	77, 105, 130
DdeI	CTNAG	2 cut(s)	21, 218
DriI	GACNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	314
Eam1105I	GACNNNNNGTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	4, 123, 160
Eco53kI	GAGCTC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	2 cut(s)	257, 281
FatI	CATG	2 cut(s)	253, 277
FauNDI	CATATG	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	50, 204, 385
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	50, 204, 385
FspBI	CTAG	3 cut(s)	102, 137, 207
GluI	GCNGC	3 cut(s)	50, 204, 385
Hin1II	CATG	2 cut(s)	257, 281
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	4 cut(s)	137, 172, 232, 254
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	99, 364
HpyCH4V	TGCA	4 cut(s)	52, 203, 246, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	21, 218
Hsp92II	CATG	2 cut(s)	257, 281
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	124, 140, 143, 213, 306, 329
Lsp1109I	GCAGC	2 cut(s)	36, 215
MaeI	CTAG	3 cut(s)	102, 137, 207
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	2 cut(s)	187, 301
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	282, 366
MnlI	CCTC	2 cut(s)	94, 173
MseI	TTAA	2 cut(s)	29, 303
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeI	CATATG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	257, 281
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	51, 205, 386
PpuMI	RGGWCCY	1 cut(s)	160
PsiI	TTATAA	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	4, 123, 160
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	205
RsaI	GTAC	3 cut(s)	78, 106, 131
RsaNI	GTAC	3 cut(s)	77, 105, 130
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	29, 303
SatI	GCNGC	3 cut(s)	50, 204, 385
Sau96I	GGNCC	3 cut(s)	4, 123, 160
ScaI	AGTACT	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	22
SfcI	CTRYAG	2 cut(s)	201, 270
SinI	GGWCC	3 cut(s)	4, 123, 160
Sse9I	AATT	2 cut(s)	282, 366
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	3 cut(s)	102, 137, 207
SstI	GAGCTC	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	99, 364
TasI	AATT	2 cut(s)	282, 366
TatI	WGTACW	2 cut(s)	76, 104
TauI	GCSGC	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	29, 303
Tru9I	TTAA	2 cut(s)	29, 303
TscAI	CASTG	2 cut(s)	253, 367
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	2 cut(s)	49, 203
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	158, 270, 294
TspRI	CASTG	2 cut(s)	253, 367
VpaK11BI	GGWCC	3 cut(s)	4, 123, 160
XbaI	TCTAGA	1 cut(s)	136
XspI	CTAG	3 cut(s)	102, 137, 207
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.