Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Forward (+)

7793648 .. 7794980

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1111500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGACTGCCATGATTCGTCGCTCATCGCACCAAACAGAAGAATAATCCGCCGTCAAGAACTGGACAAGGCGGAGAACGCATGGAAGAAACTGGAAGGCGTCGGCGAAAAACAAGAGCAAACAGTAAGGCGTCTGGAAAAAACGGCGATGCTGTTGGTCGGATCTTATATCTACCTCCAAATCCTCATATTCCAATCTGTTAGCCGCATGTCCTGCGAGTTCTGGTGGGCGCCGTTCAGCCTCTCGTGTCTGATTTGCGTTGTCTTCGCCATCCCCTTCAAGAGTTTCGTGACGAAATGGGAGCGCACGCAGCGTTATCACGAGATCAATTTTCTTAAGCAAGATTTGGTTCACCTCCAGATTGTGATTTTCTCTTCCTCGGATCACGTTGAGCAGTTGGAGCAGCCGCAGCCGCAGCCGGCGGAGATGTTGAGGAGCGATGCTGGGAAAATGTATCAGAGACGCGCTTTCATCTGTTTGGTTTCTTTAGCTCTTGTTGCGTACACGGTTGTTGTGCTAATGGCATGTAGATCTATTCCCTGTCAGAGAGTAGCTATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.75

Weight (kDa)

8.88

Isoelectric Point (pI)

69.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	1 cut(s)	465
AciI	CCGC	6 cut(s)	49, 71, 205, 407, 413, 422
AclWI	GGATC	2 cut(s)	169, 390
AcyI	GRCGYC	3 cut(s)	99, 130, 230
AfaI	GTAC	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	2 cut(s)	491, 554
AluI	AGCT	2 cut(s)	491, 554
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	169, 390
ApeKI	GCWGC	4 cut(s)	310, 403, 409, 415
AspLEI	GCGC	3 cut(s)	232, 306, 467
AsuHPI	GGTGA	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	229
BauI	CACGAG	2 cut(s)	244, 320
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	4 cut(s)	322, 415, 421, 427
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	3 cut(s)	36, 159, 217
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	560
BfoI	RGCGCY	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	335
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	7 cut(s)	205, 311, 404, 407, 410, 413, 416
BlsI	GCNGC	7 cut(s)	206, 312, 405, 408, 411, 414, 417
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	138, 430
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	341
BsaHI	GRCGYC	3 cut(s)	99, 130, 230
BsaJI	CCNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	66, 96
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	66, 96
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	4 cut(s)	322, 415, 421, 427
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	161, 324, 382, 530
BspACI	CCGC	6 cut(s)	49, 71, 205, 407, 413, 422
BspFNI	CGCG	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	169, 390
BspT107I	GGYRCC	1 cut(s)	229
BspTI	CTTAAG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	66, 96
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	4 cut(s)	161, 324, 382, 530
BssNI	GRCGYC	3 cut(s)	99, 130, 230
BssSI	CACGAG	2 cut(s)	244, 320
Bst2BI	CACGAG	2 cut(s)	244, 320
Bst4CI	ACNGT	2 cut(s)	124, 508
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	3 cut(s)	99, 130, 230
BstAFI	CTTAAG	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	308, 420
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	3 cut(s)	232, 306, 467
BstKTI	GATC	4 cut(s)	164, 327, 385, 533
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	4 cut(s)	161, 324, 382, 530
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 213, 310, 400, 409, 412, 415, 497
BstNSI	RCATGY	2 cut(s)	211, 528
BstSFI	CTRYAG	1 cut(s)	560
BstUI	CGCG	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	322, 415, 421, 427
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	2 cut(s)	161, 530
BstYI	RGATCY	2 cut(s)	161, 530
BtgZI	GCGATG	3 cut(s)	10, 161, 453
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	308, 420
CfoI	GCGC	3 cut(s)	232, 306, 467
Cfr10I	RCCGGY	1 cut(s)	418
CseI	GACGC	3 cut(s)	88, 119, 471
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	4 cut(s)	11, 81, 208, 525
CviJI	RGCY	7 cut(s)	204, 240, 406, 412, 418, 491, 554
CviKI_1	RGCY	7 cut(s)	204, 240, 406, 412, 418, 491, 554
CviQI	GTAC	1 cut(s)	502
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	4 cut(s)	163, 326, 384, 532
DpnII	GATC	4 cut(s)	161, 324, 382, 530
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	3 cut(s)	38, 86, 437
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	4 cut(s)	14, 84, 211, 528
FaiI	YATR	6 cut(s)	12, 82, 168, 188, 209, 526
FatI	CATG	4 cut(s)	10, 80, 207, 524
Fnu4HI	GCNGC	7 cut(s)	205, 311, 404, 407, 410, 413, 416
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	7 cut(s)	205, 311, 404, 407, 410, 413, 416
GlaI	GCGC	3 cut(s)	231, 305, 466
GluI	GCNGC	7 cut(s)	205, 311, 404, 407, 410, 413, 416
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	233
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	3 cut(s)	88, 119, 471
HhaI	GCGC	3 cut(s)	232, 306, 467
Hin1I	GRCGYC	3 cut(s)	99, 130, 230
Hin1II	CATG	4 cut(s)	14, 84, 211, 528
Hin6I	GCGC	3 cut(s)	230, 304, 465
HinP1I	GCGC	3 cut(s)	230, 304, 465
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	352, 504
Hpy188I	TCNGA	5 cut(s)	161, 252, 382, 459, 546
Hpy188III	TCNNGA	6 cut(s)	56, 134, 280, 289, 320, 358
Hpy8I	GTNNAC	2 cut(s)	352, 504
Hpy99I	CGWCG	2 cut(s)	22, 104
HpyAV	CCTTC	2 cut(s)	89, 286
HpyCH4III	ACNGT	2 cut(s)	124, 508
HpyCH4IV	ACGT	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 213, 310, 400, 409, 412, 415, 497
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	3 cut(s)	99, 130, 230
Hsp92II	CATG	4 cut(s)	14, 84, 211, 528
HspAI	GCGC	3 cut(s)	230, 304, 465
KasI	GGCGCC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	161, 324, 382, 530
LmnI	GCTCC	3 cut(s)	301, 400, 435
LpnPI	CCDG	9 cut(s)	47, 77, 119, 208, 226, 371, 429, 432, 553
Lsp1109I	GCAGC	4 cut(s)	322, 415, 421, 427
LweI	GCATC	2 cut(s)	138, 430
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	4 cut(s)	163, 326, 384, 532
MboI	GATC	4 cut(s)	161, 324, 382, 530
MboII	GAAGA	4 cut(s)	51, 97, 256, 366
MflI	RGATCY	2 cut(s)	161, 530
MluCI	AATT	1 cut(s)	328
Mly113I	GGCGCC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	139, 378
MnlI	CCTC	6 cut(s)	185, 194, 251, 365, 388, 426
MroNI	GCCGGC	1 cut(s)	418
MseI	TTAA	1 cut(s)	336
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	465
MwoI	GCNNNNNNNGC	8 cut(s)	77, 213, 310, 400, 409, 412, 415, 497
NaeI	GCCGGC	1 cut(s)	420
NarI	GGCGCC	1 cut(s)	230
NdeII	GATC	4 cut(s)	161, 324, 382, 530
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	14, 84, 211, 528
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	211, 528
PdiI	GCCGGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	7 cut(s)	206, 312, 405, 408, 411, 414, 417
PluTI	GGCGCC	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	161, 530
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	7 cut(s)	205, 311, 404, 407, 410, 413, 416
Sau3AI	GATC	4 cut(s)	161, 324, 382, 530
SetI	ASST	5 cut(s)	177, 357, 390, 493, 556
SfaNI	GCATC	2 cut(s)	138, 430
SfcI	CTRYAG	1 cut(s)	560
SfoI	GGCGCC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	6 cut(s)	49, 71, 205, 407, 413, 422
SspDI	GGCGCC	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	124, 508
TaiI	ACGT	1 cut(s)	390
TasI	AATT	1 cut(s)	328
TauI	GCSGC	3 cut(s)	207, 409, 415
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	4 cut(s)	310, 403, 409, 415
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	460
Vha464I	CTTAAG	1 cut(s)	335
XceI	RCATGY	2 cut(s)	211, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.