Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034044.1

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

1751 .. 2098

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034044.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgatactagtttcatctgtaatcttcttcatggctttcctagatgctgtgaccatgttttataggacccagtaccatctagatatgaaccatatggagcaggacctcatattcaagaagatacaagaagccaaacacccacctgcagctagttataagctcagtcattccatcaagatagaaaagtgcagtggtcatgaacaagaagtgcctacagagcatgaaattgcaagacctgatgtctttaagctcttcaaacgcaaggtttatatttactttacagctctgggtttgttcgctttcactgtaattcagttatacgcttgccgcttgttctatataaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

115

Amino Acids

13.64

Weight (kDa)

8.89

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	115, 256
AhdI	GACNNNNNGTC	1 cut(s)	239
AhlI	ACTAGT	1 cut(s)	7
AluBI	AGCT	4 cut(s)	149, 160, 250, 284
AluI	AGCT	4 cut(s)	149, 160, 250, 284
ApeKI	GCWGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	66, 103
AvaII	GGWCC	2 cut(s)	66, 103
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	84, 179
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	4 cut(s)	8, 41, 80, 150
BfmI	CTRYAG	2 cut(s)	144, 213
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	147, 328
BlsI	GCNGC	2 cut(s)	148, 329
Bme18I	GGWCC	2 cut(s)	66, 103
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	66, 103
BmiI	GGNNCC	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	208
BspACI	CCGC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	68
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstSFI	CTRYAG	2 cut(s)	144, 213
BstV1I	GCAGC	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	196, 303
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	66, 103
Csp6I	GTAC	1 cut(s)	73
CviAII	CATG	4 cut(s)	31, 55, 197, 221
CviJI	RGCY	6 cut(s)	35, 131, 149, 160, 250, 284
CviKI_1	RGCY	6 cut(s)	35, 131, 149, 160, 250, 284
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	1 cut(s)	161
DriI	GACNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	66, 103
EcoO109I	RGGNCCY	2 cut(s)	66, 103
FaeI	CATG	4 cut(s)	34, 58, 200, 224
FatI	CATG	4 cut(s)	30, 54, 196, 220
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	147, 328
Fsp4HI	GCNGC	2 cut(s)	147, 328
FspBI	CTAG	4 cut(s)	8, 41, 80, 150
GluI	GCNGC	2 cut(s)	147, 328
Hin1II	CATG	4 cut(s)	34, 58, 200, 224
Hpy188III	TCNNGA	4 cut(s)	80, 115, 175, 197
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	146, 189, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	34, 58, 200, 224
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	5 cut(s)	83, 86, 156, 249, 272
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	4 cut(s)	8, 41, 80, 150
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	16, 19, 130, 244
MluCI	AATT	2 cut(s)	225, 309
MnlI	CCTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeI	CATATG	1 cut(s)	93
NlaIII	CATG	4 cut(s)	34, 58, 200, 224
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	49
PagI	TCATGA	1 cut(s)	196
PaqCI	CACCTGC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	148, 329
PpuMI	RGGWCCY	2 cut(s)	66, 103
PsiI	TTATAA	1 cut(s)	156
Psp5II	RGGWCCY	2 cut(s)	66, 103
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	66, 103
PspPPI	RGGWCCY	2 cut(s)	66, 103
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	147, 328
Sau96I	GGNCC	2 cut(s)	66, 103
SetI	ASST	9 cut(s)	108, 145, 151, 162, 238, 252, 267, 286, 347
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	144, 213
SinI	GGWCC	2 cut(s)	66, 103
SpeI	ACTAGT	1 cut(s)	7
Sse9I	AATT	2 cut(s)	225, 309
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	4 cut(s)	8, 41, 80, 150
TaaI	ACNGT	1 cut(s)	307
TasI	AATT	2 cut(s)	225, 309
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	196, 310
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	19, 101, 213, 237
TspRI	CASTG	2 cut(s)	196, 310
VpaK11BI	GGWCC	2 cut(s)	66, 103
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	4 cut(s)	8, 41, 80, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.