Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

66070049 .. 66070366

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG435900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTTTCCTAGATGCTGTGACTATGTTTTATAGGACCCAGTACCATCTAGATATGAACTATATGGAGCAGGACCTCATATTCAAGAAGATACAAGAAGCCAAACACCCACCTGCAGCTAGTTATAAGCTCAGTCATTCCATCAAGATAGAAAAGTGCAGTGGTCATGAACAAGAAGTGCCTACAGAGCATGAAACTGTAAGACCTGATGTCTTTCAGTTCTTCAAACGCAAGGTTTATATTTACTTTACAGCTCTGGGTTTGTTCGCTTTCACTGTAATTCAGTTATACGCTTGCCGCTTGTTCTATATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

105

Amino Acids

12.58

Weight (kDa)

8.54

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	44
AgsI	TTSAA	2 cut(s)	85, 226
AhdI	GACNNNNNGTC	1 cut(s)	209
AluBI	AGCT	3 cut(s)	119, 130, 254
AluI	AGCT	3 cut(s)	119, 130, 254
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	36, 73
AvaII	GGWCC	2 cut(s)	36, 73
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	54, 149
BfaI	CTAG	3 cut(s)	11, 50, 120
BfmI	CTRYAG	2 cut(s)	114, 183
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	117, 298
BlsI	GCNGC	2 cut(s)	118, 299
Bme18I	GGWCC	2 cut(s)	36, 73
BmeRI	GACNNNNNGTC	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	36, 73
BmiI	GGNNCC	1 cut(s)	38
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	199, 277
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	114, 183
BstV1I	GCAGC	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 273
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	36, 73
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	167, 191
CviJI	RGCY	5 cut(s)	5, 101, 119, 130, 254
CviKI_1	RGCY	5 cut(s)	5, 101, 119, 130, 254
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	131
DriI	GACNNNNNGTC	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	36, 73
EcoO109I	RGGNCCY	2 cut(s)	36, 73
FaeI	CATG	2 cut(s)	170, 194
FatI	CATG	2 cut(s)	166, 190
Fnu4HI	GCNGC	2 cut(s)	117, 298
Fsp4HI	GCNGC	2 cut(s)	117, 298
FspBI	CTAG	3 cut(s)	11, 50, 120
GluI	GCNGC	2 cut(s)	117, 298
Hin1II	CATG	2 cut(s)	170, 194
Hpy188III	TCNNGA	4 cut(s)	50, 85, 145, 167
HpyCH4III	ACNGT	2 cut(s)	199, 277
HpyCH4V	TGCA	2 cut(s)	116, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	170, 194
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	53, 56, 126, 219, 242
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	11, 50, 120
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	100, 214
MluCI	AATT	1 cut(s)	279
MnlI	CCTC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	170, 194
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	166
PaqCI	CACCTGC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	118, 299
PpuMI	RGGWCCY	2 cut(s)	36, 73
PsiI	TTATAA	1 cut(s)	126
Psp5II	RGGWCCY	2 cut(s)	36, 73
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	36, 73
PspPPI	RGGWCCY	2 cut(s)	36, 73
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	2 cut(s)	117, 298
Sau96I	GGNCC	2 cut(s)	36, 73
SetI	ASST	8 cut(s)	78, 115, 121, 132, 208, 237, 256, 317
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	2 cut(s)	114, 183
SinI	GGWCC	2 cut(s)	36, 73
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	3 cut(s)	11, 50, 120
TaaI	ACNGT	2 cut(s)	199, 277
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	300
TscAI	CASTG	2 cut(s)	166, 280
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	71, 183, 207
TspRI	CASTG	2 cut(s)	166, 280
VpaK11BI	GGWCC	2 cut(s)	36, 73
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	3 cut(s)	11, 50, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.