Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Forward (+)

67150955 .. 67151431

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG406300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCTTTTGATGTTGATGACTTCTTCTATCCTGGATGGGCTTTTAAGGAGATGACAAGTGGAGAGCCACTGAAAGTTGCAGATAGGAGACTAGAAGGAGCAGTGGAAGAAGAAGAACTCATAAGAGCCTTGCAAACCGCATTTTGGTGCATACAAGATGAGGTTTTCATGAGACCTACAATGGGGGAAGTGGTGAGGATGCTGGAAGGATCGGTCGAAATCAACATGCCACCAATGCCCCAGACAGTTTTGGAGTTAATTGATGAAGGCTTAGATCATGTGTACCGAGCCATGAGGAGAGAGTTCAACAACCACTTCAGCTCATTCACCATCGACACCCACCATTCATCTCAAGCTACATGCAGTTATTCCACAATGTCCCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

129

Amino Acids

14.95

Weight (kDa)

4.64

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	144, 182
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	321, 356
AluI	AGCT	2 cut(s)	321, 356
Alw26I	GTCTC	2 cut(s)	82, 166
AlwI	GGATC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	205, 319
BccI	CCATC	2 cut(s)	30, 338
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	82, 166
BfaI	CTAG	2 cut(s)	92, 384
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 182
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	41, 204
BseLI	CCNNNNNNNGG	2 cut(s)	144, 182
BseRI	GAGGAG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	144, 182
BsmAI	GTCTC	2 cut(s)	82, 166
BsmFI	GGGAC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	209, 274
BspACI	CCGC	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	168
BspPI	GGATC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	166
BssMI	GATC	2 cut(s)	209, 274
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	41, 204
BstKTI	GATC	2 cut(s)	212, 277
BstMAI	GTCTC	2 cut(s)	82, 166
BstMBI	GATC	2 cut(s)	209, 274
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	229, 363
BstSCI	CCNGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	41, 204
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	68, 108
CciI	TCATGA	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	5 cut(s)	169, 226, 278, 292, 360
CviJI	RGCY	7 cut(s)	41, 67, 128, 270, 290, 321, 356
CviKI_1	RGCY	7 cut(s)	41, 67, 128, 270, 290, 321, 356
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	2 cut(s)	211, 276
DpnII	GATC	2 cut(s)	209, 274
Eco31I	GGTCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	172, 229, 281, 295, 363
FaiI	YATR	7 cut(s)	122, 152, 170, 227, 279, 293, 361
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	5 cut(s)	168, 225, 277, 291, 359
FokI	GGATG	2 cut(s)	48, 211
FspBI	CTAG	2 cut(s)	92, 384
Hin1II	CATG	5 cut(s)	172, 229, 281, 295, 363
HphI	GGTGA	2 cut(s)	205, 319
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	89, 200, 260
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	80, 133, 150, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	5 cut(s)	172, 229, 281, 295, 363
Kzo9I	GATC	2 cut(s)	209, 274
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	4 cut(s)	18, 45, 188, 254
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	92, 384
MalI	GATC	2 cut(s)	211, 276
MboI	GATC	2 cut(s)	209, 274
MboII	GAAGA	4 cut(s)	16, 119, 122, 125
MluCI	AATT	1 cut(s)	258
MnlI	CCTC	3 cut(s)	154, 189, 288
MseI	TTAA	2 cut(s)	45, 257
MslI	CAYNNNNRTG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	2 cut(s)	209, 274
NlaIII	CATG	5 cut(s)	172, 229, 281, 295, 363
NspI	RCATGY	2 cut(s)	229, 363
PagI	TCATGA	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	45, 257
Sau3AI	GATC	2 cut(s)	209, 274
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	165, 178, 323, 358
SfaNI	GCATC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	92, 384
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	216, 333
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	2 cut(s)	45, 257
Tru9I	TTAA	2 cut(s)	45, 257
TscAI	CASTG	2 cut(s)	75, 108
TspDTI	ATGAA	3 cut(s)	157, 279, 336
TspRI	CASTG	2 cut(s)	75, 108
XceI	RCATGY	2 cut(s)	229, 363
XspI	CTAG	2 cut(s)	92, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.