Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

41723530 .. 41724953

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTCCTTCTGCACTAGAGGACTTGGAGACCAAACAGAAGAAACTGGATTCTATAGGTAAAAAGCAAGAGAAAACAGCAAGATATTTTGAAGCCACAACGATAAAGCTGGTCGGCAACTACATAATCTTCCAGGCAATAATTTTTCTGGCCGTTTCAAACCACAGTAACCTCCCCTGTAAATATTGGTGGATTCCTTTCTGCCTTTCGTCCCTGGTTGCGGTCGTCTTTGCCATCACATTTAAGACATTCATCACCAACTGGGAGCGTACTCGATCTCACTACGACAAGAACTTCCTGCAGCGGGATTGGATTCATCACCAGATTGTCTTGTTTCCAATAAGAGAATCAAAAGGGCGATCCTTGGATCAATTAAAATTGCATGATCATCAGCAACAACCGGAGATATTGAAGCCTGCCGTTCCATTCTCTGTCATAACTAGCGAAGCTGGTGGAACCAAATTGAATATGTACGTACAGGGTATTCTGGACTTTGAAAAAGTTAATCATCTTTATAGGCCCGGCTTTGCCCACGGGCAAGCTTGGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.28

Weight (kDa)

9.44

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 304
AclWI	GGATC	2 cut(s)	354, 375
AcoI	YGGCCR	1 cut(s)	150
AfaI	GTAC	3 cut(s)	271, 473, 477
AfiI	CCNNNNNNNGG	2 cut(s)	220, 304
AgsI	TTSAA	5 cut(s)	92, 159, 412, 466, 497
AjnI	CCWGG	2 cut(s)	132, 213
AluBI	AGCT	3 cut(s)	109, 449, 542
AluI	AGCT	3 cut(s)	109, 449, 542
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	354, 375
AoxI	GGCC	2 cut(s)	150, 518
ApeKI	GCWGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	247, 311
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	2 cut(s)	137, 404
BciT130I	CCWGG	2 cut(s)	134, 215
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	17, 441
BfmI	CTRYAG	2 cut(s)	54, 299
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	3 cut(s)	134, 215, 522
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	2 cut(s)	6, 457
BmrFI	CCNGG	3 cut(s)	134, 215, 522
BmrI	ACTGGG	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	213, 363, 532
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 304
Bse1I	ACTGG	2 cut(s)	51, 266
BseBI	CCWGG	2 cut(s)	134, 215
BseDI	CCNNGG	3 cut(s)	213, 363, 532
BseLI	CCNNNNNNNGG	2 cut(s)	220, 304
BseNI	ACTGG	2 cut(s)	51, 266
BseXI	GCAGC	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	152, 520
BsiEI	CGRYCG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	401, 522
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	220, 304
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	152, 520
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	275, 359, 367, 385
BspACI	CCGC	2 cut(s)	221, 304
BspANI	GGCC	2 cut(s)	152, 520
BspLI	GGNNCC	2 cut(s)	6, 457
BspMAI	CTGCAG	1 cut(s)	303
BspPI	GGATC	2 cut(s)	354, 375
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	51, 266
BssECI	CCNNGG	3 cut(s)	213, 363, 532
BssMI	GATC	4 cut(s)	275, 359, 367, 385
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	134, 215
Bst4CI	ACNGT	1 cut(s)	167
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	417, 540
BstDSI	CCRYGG	1 cut(s)	532
BstKTI	GATC	4 cut(s)	278, 362, 370, 388
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	275, 359, 367, 385
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 544
BstNI	CCWGG	2 cut(s)	134, 215
BstSCI	CCNGG	3 cut(s)	132, 213, 520
BstSFI	CTRYAG	2 cut(s)	54, 299
BstSNI	TACGTA	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	152, 520
BtgI	CCRYGG	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	417, 540
Cfr13I	GGNCC	1 cut(s)	519
Csp6I	GTAC	3 cut(s)	270, 472, 476
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	9 cut(s)	5, 95, 109, 152, 415, 449, 520, 525, 542
CviKI_1	RGCY	9 cut(s)	5, 95, 109, 152, 415, 449, 520, 525, 542
CviQI	GTAC	3 cut(s)	270, 472, 476
DpnI	GATC	4 cut(s)	277, 361, 369, 387
DpnII	GATC	4 cut(s)	275, 359, 367, 385
EaeI	YGGCCR	1 cut(s)	150
Eco105I	TACGTA	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	132, 213
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	386
FaiI	YATR	6 cut(s)	56, 125, 384, 437, 470, 516
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	382
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	17, 441
GluI	GCNGC	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	152, 520
HapII	CCGG	2 cut(s)	401, 522
Hin1II	CATG	1 cut(s)	386
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	50, 193, 313, 347
HpaII	CCGG	2 cut(s)	401, 522
HphI	GGTGA	2 cut(s)	247, 311
Hpy188III	TCNNGA	1 cut(s)	488
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	14, 301, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 544
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	1 cut(s)	386
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	275, 359, 367, 385
LmnI	GCTCC	2 cut(s)	10, 265
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	17, 441
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	277, 361, 369, 387
MboI	GATC	4 cut(s)	275, 359, 367, 385
MboII	GAAGA	2 cut(s)	52, 121
MluCI	AATT	4 cut(s)	141, 371, 377, 461
MnlI	CCTC	2 cut(s)	13, 182
MseI	TTAA	3 cut(s)	243, 374, 504
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	2 cut(s)	401, 522
MspR9I	CCNGG	3 cut(s)	134, 215, 522
MvaI	CCWGG	2 cut(s)	134, 215
MwoI	GCNNNNNNNGC	2 cut(s)	11, 544
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	4 cut(s)	275, 359, 367, 385
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	2 cut(s)	6, 457
PfeI	GAWTC	4 cut(s)	50, 193, 313, 347
PkrI	GCNGC	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	132, 213
PspGI	CCWGG	2 cut(s)	132, 213
PspN4I	GGNNCC	2 cut(s)	6, 457
PspPI	GGNCC	1 cut(s)	519
PstI	CTGCAG	1 cut(s)	303
RsaI	GTAC	3 cut(s)	271, 473, 477
RsaNI	GTAC	3 cut(s)	270, 472, 476
SaqAI	TTAA	3 cut(s)	243, 374, 504
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	275, 359, 367, 385
Sau96I	GGNCC	1 cut(s)	519
ScrFI	CCNGG	3 cut(s)	134, 215, 522
SetI	ASST	6 cut(s)	61, 111, 174, 451, 477, 544
SfcI	CTRYAG	2 cut(s)	54, 299
SnaBI	TACGTA	1 cut(s)	475
Sse9I	AATT	4 cut(s)	141, 371, 377, 461
SsiI	CCGC	2 cut(s)	221, 304
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	17, 441
StyD4I	CCNGG	3 cut(s)	132, 213, 520
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	274
TasI	AATT	4 cut(s)	141, 371, 377, 461
TfiI	GAWTC	4 cut(s)	50, 193, 313, 347
Tru1I	TTAA	3 cut(s)	243, 374, 504
Tru9I	TTAA	3 cut(s)	243, 374, 504
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	241, 305
XspI	CTAG	2 cut(s)	17, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.