Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007323.1

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

8607 .. 9092

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007323.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggtccacgagacaagagctcagaacttaacaatcgcttatgttctgctgcaaggcttgttttccatagggattgtactttcctcgtcgtcaccaccgtctagtactcccagaaatcaatggtgggttcccttctccatgatactagtttcatctgtaatcttcttcatggctttcctagatgctgtgactatgttttataggacccagtaccatctagatatgaactatatggagcaggacctcatattcaagaagatacaagaagccaaacacccacctgcagctagttataagctcagtcattccatcaagatagaaaagtgcagtggtcatgaacaagaagtgcctacagagcatgaaattgcaagacctgatgtctttcagctcttcaaacgcaaggtttatatttactttacagctctgggtttgttcgctttcactgtaattcagttatgcgcttgccgcttgttctatataaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

161

Amino Acids

18.71

Weight (kDa)

8.78

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	1 cut(s)	466
AfaI	GTAC	3 cut(s)	78, 106, 212
AgsI	TTSAA	2 cut(s)	253, 394
AhdI	GACNNNNNGTC	1 cut(s)	377
AhlI	ACTAGT	1 cut(s)	145
AluBI	AGCT	5 cut(s)	20, 287, 298, 388, 422
AluI	AGCT	5 cut(s)	20, 287, 298, 388, 422
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	49, 284
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	3 cut(s)	4, 204, 241
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	3 cut(s)	4, 204, 241
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	36, 296
BccI	CCATC	2 cut(s)	222, 317
BcoDI	GTCTC	1 cut(s)	5
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	5 cut(s)	102, 146, 179, 218, 288
BfmI	CTRYAG	2 cut(s)	282, 351
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	50, 285, 466
BlsI	GCNGC	3 cut(s)	51, 286, 467
BmcAI	AGTACT	1 cut(s)	106
Bme18I	GGWCC	3 cut(s)	4, 204, 241
BmeRI	GACNNNNNGTC	1 cut(s)	377
BmgT120I	GGNCC	3 cut(s)	4, 204, 241
BmiI	GGNNCC	2 cut(s)	129, 206
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	35, 313
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	36, 296
BsgI	GTGCAG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	2 cut(s)	34, 312
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	129, 206
BspMAI	CTGCAG	1 cut(s)	286
BspMI	ACCTGC	1 cut(s)	289
BspQI	GCTCTTC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	99, 445
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	21, 299
BstHHI	GCGC	1 cut(s)	461
BstMAI	GTCTC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 465
BstSFI	CTRYAG	2 cut(s)	282, 351
BstV1I	GCAGC	2 cut(s)	36, 296
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	334, 441
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	463
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	4, 204, 241
Csp6I	GTAC	3 cut(s)	77, 105, 211
CviAII	CATG	4 cut(s)	139, 169, 335, 359
CviJI	RGCY	8 cut(s)	20, 57, 173, 269, 287, 298, 388, 422
CviKI_1	RGCY	8 cut(s)	20, 57, 173, 269, 287, 298, 388, 422
CviQI	GTAC	3 cut(s)	77, 105, 211
DdeI	CTNAG	2 cut(s)	21, 299
DriI	GACNNNNNGTC	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	395
Eam1105I	GACNNNNNGTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	4, 204, 241
Eco53kI	GAGCTC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	2 cut(s)	204, 241
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	4 cut(s)	142, 172, 338, 362
FatI	CATG	4 cut(s)	138, 168, 334, 358
Fnu4HI	GCNGC	3 cut(s)	50, 285, 466
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	50, 285, 466
FspBI	CTAG	5 cut(s)	102, 146, 179, 218, 288
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	50, 285, 466
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	142, 172, 338, 362
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	4 cut(s)	218, 253, 313, 335
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	99, 445
HpyCH4V	TGCA	4 cut(s)	52, 284, 327, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 465
HpyF3I	CTNAG	2 cut(s)	21, 299
Hsp92II	CATG	4 cut(s)	142, 172, 338, 362
HspAI	GCGC	1 cut(s)	459
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	6 cut(s)	124, 221, 224, 294, 387, 410
Lsp1109I	GCAGC	2 cut(s)	36, 296
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	5 cut(s)	102, 146, 179, 218, 288
MaeIII	GTNAC	2 cut(s)	90, 187
MboII	GAAGA	4 cut(s)	154, 157, 268, 382
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	363, 447
MnlI	CCTC	2 cut(s)	94, 254
MseI	TTAA	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	355, 465
NlaIII	CATG	4 cut(s)	142, 172, 338, 362
NlaIV	GGNNCC	2 cut(s)	129, 206
NmuCI	GTSAC	2 cut(s)	90, 187
PagI	TCATGA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	51, 286, 467
PpuMI	RGGWCCY	2 cut(s)	204, 241
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	2 cut(s)	204, 241
PspN4I	GGNNCC	2 cut(s)	129, 206
PspPI	GGNCC	3 cut(s)	4, 204, 241
PspPPI	RGGWCCY	2 cut(s)	204, 241
PstI	CTGCAG	1 cut(s)	286
RsaI	GTAC	3 cut(s)	78, 106, 212
RsaNI	GTAC	3 cut(s)	77, 105, 211
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	50, 285, 466
Sau96I	GGNCC	3 cut(s)	4, 204, 241
ScaI	AGTACT	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	2 cut(s)	282, 351
SinI	GGWCC	3 cut(s)	4, 204, 241
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	2 cut(s)	363, 447
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	5 cut(s)	102, 146, 179, 218, 288
SstI	GAGCTC	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	99, 445
TasI	AATT	2 cut(s)	363, 447
TatI	WGTACW	2 cut(s)	76, 104
TauI	GCSGC	1 cut(s)	468
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	334, 448
TseFI	GTSAC	2 cut(s)	90, 187
TseI	GCWGC	2 cut(s)	49, 284
Tsp45I	GTSAC	2 cut(s)	90, 187
TspDTI	ATGAA	5 cut(s)	141, 157, 239, 351, 375
TspRI	CASTG	2 cut(s)	334, 448
VpaK11BI	GGWCC	3 cut(s)	4, 204, 241
XbaI	TCTAGA	1 cut(s)	217
XspI	CTAG	5 cut(s)	102, 146, 179, 218, 288
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.