Prupe.1G469700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004870
Physical Location & Seq
Reverse (-)
39128782 .. 39131029
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G469700.1

Sequence Viewer

Length: 510 bp
ATGGATCCAGAAGAGCAAACGGACATGCAATCCATCAAATTAGCTTCCCTTGAAGAAAAACAACACAAAAAAGTCAGATATTATGAAACAACGACGATAAAGCTGGTCATCGCTTATATTTTCTTCCAAGCTGTTATATTCTTGTCTGTTTTTCTCCAAAACCCAGCCATCATCTCCTGCCAGCATTGGTGGATTCCGTTCAGCCTCTCGTCTCTGATTACTTTCATCTTTTCCATAAGCTTCACCAGATTCGCCAGCAAGTTGGAACGTATACAACACCAGCACGACATCACTGTCATGGAGCGAGATTCGAATCACCACCGAAAAATGCTCCAACAAAGAGATCCAACCAATACTCATGATCTGCTTCAGCAACAGCAACAGATTTTGAAGGGCGATGTTGTGGACGTTTATCAGAGAAATGGCTTCATTTACTTGGTATTTGCTGCCCTTCTTGTCTACACGGTTATCATCTTAATAGCCTGTCGATTCGTTATCTGTAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.97

Weight (kDa)

7.78

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccI GTMKAC 2 cut(s) 271, 459
AclWI GGATC 2 cut(s) 12, 338
AcuI CTGAAG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 53, 391
AluBI AGCT 4 cut(s) 44, 103, 131, 240
AluI AGCT 4 cut(s) 44, 103, 131, 240
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 2 cut(s) 12, 338
ApeKI GCWGC 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 235, 308
AsuII TTCGAA 1 cut(s) 311
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 41, 176
BcoDI GTCTC 1 cut(s) 216
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmiI GGNNCC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 312
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 216
BsmBI CGTCTC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 311
Bsp143I GATC 3 cut(s) 4, 343, 361
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 338
BspQI GCTCTTC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 311
BssMI GATC 3 cut(s) 4, 343, 361
BssNAI GTATAC 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 295, 466
Bst6I CTCTTC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 182, 256
BstKTI GATC 3 cut(s) 7, 346, 364
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 3 cut(s) 4, 343, 361
BstNSI RCATGY 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 4, 343
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 2 cut(s) 4, 343
BstZ17I GTATAC 1 cut(s) 272
BtgZI GCGATG 2 cut(s) 94, 411
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 182, 256
CciI TCATGA 1 cut(s) 358
CviAII CATG 3 cut(s) 25, 298, 359
CviJI RGCY 8 cut(s) 44, 103, 131, 167, 204, 240, 426, 482
CviKI_1 RGCY 8 cut(s) 44, 103, 131, 167, 204, 240, 426, 482
DpnI GATC 3 cut(s) 6, 345, 363
DpnII GATC 3 cut(s) 4, 343, 361
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 28, 301, 362
FaiI YATR 8 cut(s) 26, 84, 117, 137, 236, 272, 299, 360
FatI CATG 3 cut(s) 24, 297, 358
FblI GTMKAC 2 cut(s) 271, 459
Fnu4HI GCNGC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 28, 301, 362
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 5 cut(s) 193, 249, 308, 313, 489
HphI GGTGA 2 cut(s) 235, 308
Hpy166II GTNNAC 3 cut(s) 272, 406, 460
Hpy188I TCNGA 3 cut(s) 77, 216, 417
Hpy188III TCNNGA 2 cut(s) 8, 359
Hpy8I GTNNAC 3 cut(s) 272, 406, 460
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 385, 461
HpyCH4III ACNGT 2 cut(s) 295, 466
HpyCH4IV ACGT 2 cut(s) 268, 408
HpyCH4V TGCA 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 268, 408
Hsp92II CATG 3 cut(s) 28, 301, 362
Kzo9I GATC 3 cut(s) 4, 343, 361
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 301, 336
LpnPI CCDG 9 cut(s) 21, 89, 177, 190, 194, 259, 268, 293, 496
Lsp1109I GCAGC 1 cut(s) 433
MaeII ACGT 2 cut(s) 268, 408
MalI GATC 3 cut(s) 6, 345, 363
MboI GATC 3 cut(s) 4, 343, 361
MboII GAAGA 3 cut(s) 23, 65, 115
MflI RGATCY 2 cut(s) 4, 343
MluCI AATT 1 cut(s) 38
MmeI TCCRAC 3 cut(s) 243, 358, 371
MnlI CCTC 1 cut(s) 215
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 296
NdeII GATC 3 cut(s) 4, 343, 361
NlaIII CATG 3 cut(s) 28, 301, 362
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 28
NspV TTCGAA 1 cut(s) 311
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 6
PfeI GAWTC 5 cut(s) 193, 249, 308, 313, 489
PkrI GCNGC 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 343
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 3 cut(s) 4, 343, 361
SetI ASST 6 cut(s) 46, 105, 133, 242, 271, 411
SfuI TTCGAA 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 38
TaaI ACNGT 2 cut(s) 295, 466
TaiI ACGT 2 cut(s) 271, 411
TaqI TCGA 2 cut(s) 311, 487
TasI AATT 1 cut(s) 38
TfiI GAWTC 5 cut(s) 193, 249, 308, 313, 489
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 3 cut(s) 99, 214, 418
TspGWI ACGGA 2 cut(s) 35, 186
TspRI CASTG 1 cut(s) 298
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 2 cut(s) 271, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.