Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004870

Physical Location & Seq

Genomic Coordinates Reverse (-)

66070431 .. 66071768

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG436000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCCATGTTCAAGAACGTAACCCGTTTGCATATATTATCGAGGGTTAAAGGGAATGGATTGATGAAGATCCTGCAGAACTCTCCTTCTCTTTCTGAAATTCTCATATTCTATGAGGGAATTTATCTACCCTTTGATATAGAATCTCTGCCTTTGTGTCTGTCACATTTGAAGAACATAGAGTTTCGTGTGTATGGAAATGAAATAATAACTTCGGAAAATGCATTCAAGTATTTGCTAGAAAATGCATTTGTTTTGAAGAAGATGATTATTTCATTCTATTGGACCGGTTCATTGACTTCATTCTCTGGAGACGAAGAAAACTTCAGAAAGTACATTTTGGAACTTCCCCGAAGATCAAAAGATTGTGAAAGTCGAAAGGCACAAAGCCGCGTAGACCTTGTTGATAATTTCCTGCATTATTGCTCCGGCGAGCAGCTCATCATGAACTTAGAAGAGCTCAAGGAAAGCTTCAAGGAACTGAGAATCATTAGCGAACCGCAAGAAAAACGTGTATGGTACCACGAGACAAGAGCTCAGAACTTAATAATGCTGCAAGGCTTGTTTTTCATAGGGATTGTACGTACAAGCACAAGGCTCATCCTCATCGTCACCACCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

207

Amino Acids

24.28

Weight (kDa)

8.37

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004870)

Species	Orthologous Gene IDs
malus_domestica	MD08G1133000.v1.1 MD15G1111500.v1.1
prunus_persica	Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G464100_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1 Prupe.1G469700_v2.0.a1
pyrus_communis	pycom07g25650
rosa_chinensis	RchiOBHm_Chr1g0379631
rosa_laevigata	RLG00000003047 RLG00000026374 RLG00000026377
rosa_multiflora	Rmu_sc0007323.1_g000002 Rmu_sc0022226.1_g000002 Rmu_sc0034044.1_g000002
rosa_roxburghii	Rroxscaffold_3G00248410
rosa_rugosa	Rorug01G0413100 Rorug01G0413800 Rorug05G0539800 Rorug05G0540300 Rorug05G0541000
rosa_samantha	Rh1AG435900 Rh1AG436000 Rh1AG437500 Rh1BG393600 Rh1CG406300 Rh1DG424500
rosa_wichuraiana	Rw1G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	393
AciI	CCGC	2 cut(s)	391, 500
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	99, 120
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	4 cut(s)	335, 521, 582, 586
AflIII	ACRYGT	1 cut(s)	511
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	13, 172, 229, 259, 475
AluBI	AGCT	4 cut(s)	439, 460, 471, 536
AluI	AGCT	4 cut(s)	439, 460, 471, 536
Alw21I	GWGCWC	2 cut(s)	462, 538
Alw26I	GTCTC	2 cut(s)	306, 521
AlwI	GGATC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	436, 553
ApoI	RAATTY	2 cut(s)	99, 120
AsiGI	ACCGGT	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	2 cut(s)	462, 538
BauI	CACGAG	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	462, 538
BbvI	GCAGC	2 cut(s)	448, 540
BcoDI	GTCTC	2 cut(s)	306, 521
BfaI	CTAG	2 cut(s)	239, 622
BfmI	CTRYAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	391, 437, 554
BlsI	GCNGC	3 cut(s)	392, 438, 555
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	68
BseGI	GGATG	1 cut(s)	600
BseJI	GATNNNNATC	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	473, 551
BseXI	GCAGC	2 cut(s)	448, 540
Bsh1236I	CGCG	1 cut(s)	393
BshNI	GGYRCC	1 cut(s)	519
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	462, 538
BsiSI	CCGG	2 cut(s)	288, 429
BsmAI	GTCTC	2 cut(s)	306, 521
BsmBI	CGTCTC	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	462, 538
Bsp143I	GATC	2 cut(s)	69, 356
BspACI	CCGC	2 cut(s)	391, 500
BspCNI	CTCAG	2 cut(s)	474, 550
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	2 cut(s)	69, 356
BssSI	CACGAG	1 cut(s)	524
Bst2BI	CACGAG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	451, 482, 537
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	2 cut(s)	72, 359
BstMAI	GTCTC	2 cut(s)	306, 521
BstMBI	GATC	2 cut(s)	69, 356
BstSFI	CTRYAG	1 cut(s)	74
BstSNI	TACGTA	1 cut(s)	584
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	448, 540
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	434
CciI	TCATGA	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	4 cut(s)	334, 520, 581, 585
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	2 cut(s)	7, 445
CviJI	RGCY	7 cut(s)	390, 439, 460, 471, 536, 561, 598
CviKI_1	RGCY	7 cut(s)	390, 439, 460, 471, 536, 561, 598
CviQI	GTAC	4 cut(s)	334, 520, 581, 585
DdeI	CTNAG	3 cut(s)	451, 482, 537
DpnI	GATC	2 cut(s)	71, 358
DpnII	GATC	2 cut(s)	69, 356
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	2 cut(s)	460, 536
Eco105I	TACGTA	1 cut(s)	584
Eco24I	GRGCYC	2 cut(s)	462, 538
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	2 cut(s)	460, 536
Eco57I	CTGAAG	1 cut(s)	310
EcoICRI	GAGCTC	2 cut(s)	460, 536
EcoT22I	ATGCAT	2 cut(s)	226, 250
EcoT38I	GRGCYC	2 cut(s)	462, 538
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	10, 448
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FatI	CATG	2 cut(s)	6, 444
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	391, 437, 554
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	2 cut(s)	462, 538
Fsp4HI	GCNGC	3 cut(s)	391, 437, 554
FspBI	CTAG	2 cut(s)	239, 622
GluI	GCNGC	3 cut(s)	391, 437, 554
GsuI	CTGGAG	1 cut(s)	330
HapII	CCGG	2 cut(s)	288, 429
Hin1II	CATG	2 cut(s)	10, 448
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	2 cut(s)	143, 486
HpaII	CCGG	2 cut(s)	288, 429
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	97, 217, 329, 540
Hpy188III	TCNNGA	3 cut(s)	13, 309, 445
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	3 cut(s)	18, 511, 583
HpyCH4V	TGCA	6 cut(s)	31, 76, 224, 248, 418, 556
HpyF3I	CTNAG	3 cut(s)	451, 482, 537
HpySE526I	ACGT	3 cut(s)	18, 511, 583
Hsp92II	CATG	2 cut(s)	10, 448
KpnI	GGTACC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	69, 356
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	1 cut(s)	431
LpnPI	CCDG	5 cut(s)	86, 294, 301, 428, 442
Lsp1109I	GCAGC	2 cut(s)	448, 540
MaeI	CTAG	2 cut(s)	239, 622
MaeII	ACGT	3 cut(s)	18, 511, 583
MaeIII	GTNAC	3 cut(s)	19, 162, 610
MalI	GATC	2 cut(s)	71, 358
MboI	GATC	2 cut(s)	69, 356
MboII	GAAGA	7 cut(s)	79, 184, 271, 274, 329, 366, 467
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	462, 538
MluCI	AATT	3 cut(s)	99, 120, 409
MnlI	CCTC	3 cut(s)	36, 109, 614
Mph1103I	ATGCAT	2 cut(s)	226, 250
MseI	TTAA	2 cut(s)	48, 545
MspI	CCGG	2 cut(s)	288, 429
Mva1269I	GAATGC	1 cut(s)	224
MvnI	CGCG	1 cut(s)	393
NdeII	GATC	2 cut(s)	69, 356
NlaIII	CATG	2 cut(s)	10, 448
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	2 cut(s)	162, 610
NsiI	ATGCAT	2 cut(s)	226, 250
PagI	TCATGA	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	143, 486
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	392, 438, 555
Ppu21I	YACGTR	1 cut(s)	584
Psp124BI	GAGCTC	2 cut(s)	462, 538
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	1 cut(s)	285
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	4 cut(s)	335, 521, 582, 586
RsaNI	GTAC	4 cut(s)	334, 520, 581, 585
SacI	GAGCTC	2 cut(s)	462, 538
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	48, 545
SatI	GCNGC	3 cut(s)	391, 437, 554
Sau3AI	GATC	2 cut(s)	69, 356
Sau96I	GGNCC	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	462, 538
SetI	ASST	8 cut(s)	21, 402, 441, 462, 473, 514, 538, 586
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
SnaBI	TACGTA	1 cut(s)	584
Sse9I	AATT	3 cut(s)	99, 120, 409
SsiI	CCGC	2 cut(s)	391, 500
SspMI	CTAG	2 cut(s)	239, 622
SstI	GAGCTC	2 cut(s)	462, 538
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	3 cut(s)	21, 514, 586
TaqI	TCGA	2 cut(s)	41, 376
TasI	AATT	3 cut(s)	99, 120, 409
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	143, 486
Tru1I	TTAA	2 cut(s)	48, 545
Tru9I	TTAA	2 cut(s)	48, 545
TseFI	GTSAC	2 cut(s)	162, 610
TseI	GCWGC	2 cut(s)	436, 553
Tsp45I	GTSAC	2 cut(s)	162, 610
TspDTI	ATGAA	7 cut(s)	80, 216, 264, 282, 291, 461, 559
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	99, 120
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	2 cut(s)	239, 622
Zsp2I	ATGCAT	2 cut(s)	226, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.