Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

426517 .. 427802

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1005700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGTCAGAGAAGAGCTCCTCCGTGCTCCAAGTCACTTCTTCAGGCGGTACACGGCGGATGATGACTCCGTTGACCGCTCAAGTTGCTCTCAGAATCACAGCCATATTCTTCACACTCATCGCCATCTCCGTTACAGTCACCAACGGCCAATCCGTCGTCGTGTTCGGACTCGAGTTCAAAGCTCACTACTCCTACTCAACTGCCTTCAGGTTCTTGGTTGGTGCTAATGTTGTGGTGTGTACCTTCTCAGTGCTCTCATTGATCTTTGTATCCTTCTTAAGCCGTCCAGCATATCAACACCTCAAAAACTACTTCTTTCTCTTCTTGCACGACACGGCGTTGATGGTGCTAATGATATCCGGATGCGCAGCGGCGACGGCAATCGGGTACGTGGGGAAGTATGGAGAGAAGAAAATGACTTGGCAGCCAACGTGCGGTTATGTGAAGGAGTTCTGCAACAAAATGACCGTCTCTCTTGTGTTTTCTTACCTGGCTTTCTCTGCCTACTTGCTTCTCACTCTCATGGGTGCTCACAATCTCATGCCTCGCCCTACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

9.48

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MARVEL	PF01284	25 - 174	3.8e-06	Membrane-associating domain
CASP_dom	PF04535	26 - 168	2e-37	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	362
AciI	CCGC	5 cut(s)	48, 58, 78, 374, 438
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	2 cut(s)	27, 193
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	52, 244, 392
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	2 cut(s)	18, 185
AluI	AGCT	2 cut(s)	18, 185
Alw21I	GWGCWC	4 cut(s)	20, 30, 258, 535
Alw26I	GTCTC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	362
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	371, 427
ArsI	GACNNNNNNTTYG	2 cut(s)	456, 488
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	4 cut(s)	20, 30, 258, 535
BbvI	GCAGC	2 cut(s)	383, 439
BccI	CCATC	2 cut(s)	134, 340
BceAI	ACGGC	5 cut(s)	71, 163, 270, 354, 396
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	478
BfrI	CTTAAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	3 cut(s)	372, 375, 428
BlsI	GCNGC	3 cut(s)	373, 376, 429
Bme1390I	CCNGG	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	356
BplI	GAGNNNNNCTC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
BseAI	TCCGGA	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	66, 371
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	106, 264
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	383, 439
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	4 cut(s)	20, 30, 258, 535
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	1 cut(s)	478
BsmBI	CGTCTC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	4 cut(s)	20, 30, 258, 535
Bsp13I	TCCGGA	1 cut(s)	362
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	5 cut(s)	48, 58, 78, 374, 438
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	105, 263
BspEI	TCCGGA	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	80
BssMI	GATC	1 cut(s)	264
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	139, 472
Bst6I	CTCTTC	2 cut(s)	8, 329
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	92, 250
BstF5I	GGATG	2 cut(s)	66, 371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 380, 503
BstNI	CCWGG	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	383, 439
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	66, 371
BtsIMutI	CAGTG	1 cut(s)	258
CfoI	GCGC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	51, 243, 391
CviAII	CATG	2 cut(s)	526, 544
CviJI	RGCY	7 cut(s)	18, 104, 150, 185, 285, 430, 497
CviKI_1	RGCY	7 cut(s)	18, 104, 150, 185, 285, 430, 497
CviQI	GTAC	3 cut(s)	51, 243, 391
DdeI	CTNAG	2 cut(s)	92, 250
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	8, 329
EarI	CTCTTC	2 cut(s)	8, 329
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	27, 193
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	2 cut(s)	529, 547
FaiI	YATR	6 cut(s)	107, 295, 405, 444, 527, 545
FatI	CATG	2 cut(s)	525, 543
Fnu4HI	GCNGC	3 cut(s)	372, 375, 428
FokI	GGATG	2 cut(s)	73, 378
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	372, 375, 428
FspI	TGCGCA	1 cut(s)	370
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	3 cut(s)	372, 375, 428
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	529, 547
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	3 cut(s)	67, 96, 171
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	53, 75, 243
Hpy188I	TCNGA	3 cut(s)	10, 95, 170
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	3 cut(s)	53, 75, 243
Hpy99I	CGWCG	3 cut(s)	161, 164, 382
HpyAV	CCTTC	4 cut(s)	217, 256, 286, 442
HpyCH4III	ACNGT	2 cut(s)	139, 472
HpyCH4IV	ACGT	2 cut(s)	393, 434
HpyCH4V	TGCA	2 cut(s)	331, 459
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 380, 503
HpyF3I	CTNAG	2 cut(s)	92, 250
HpySE526I	ACGT	2 cut(s)	393, 434
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	529, 547
HspAI	GCGC	1 cut(s)	369
Kpn2I	TCCGGA	1 cut(s)	362
Kzo9I	GATC	1 cut(s)	264
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	2 cut(s)	23, 33
LpnPI	CCDG	6 cut(s)	30, 196, 303, 376, 479, 506
Lsp1109I	GCAGC	2 cut(s)	383, 439
LweI	GCATC	1 cut(s)	356
MaeII	ACGT	2 cut(s)	393, 434
MaeIII	GTNAC	3 cut(s)	34, 133, 139
MalI	GATC	1 cut(s)	266
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	264
MboII	GAAGA	5 cut(s)	25, 33, 103, 316, 424
MhlI	GDGCHC	4 cut(s)	20, 30, 258, 535
MlyI	GAGTC	2 cut(s)	61, 165
MnlI	CCTC	3 cut(s)	31, 314, 558
MroI	TCCGGA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	86, 380, 503
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	2 cut(s)	529, 547
NmuCI	GTSAC	2 cut(s)	34, 139
NsbI	TGCGCA	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 153
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	373, 376, 429
PleI	GAGTC	2 cut(s)	61, 165
PpsI	GAGTC	2 cut(s)	61, 165
Ppu21I	YACGTR	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspXI	VCTCGAGB	1 cut(s)	173
RsaI	GTAC	3 cut(s)	52, 244, 392
RsaNI	GTAC	3 cut(s)	51, 243, 391
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	372, 375, 428
Sau3AI	GATC	1 cut(s)	264
SchI	GAGTC	2 cut(s)	61, 165
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	4 cut(s)	20, 30, 258, 535
SetI	ASST	8 cut(s)	20, 187, 215, 248, 306, 396, 437, 495
SfaNI	GCATC	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	81, 173, 280
SmoI	CTYRAG	3 cut(s)	81, 173, 280
SsiI	CCGC	5 cut(s)	48, 58, 78, 374, 438
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	139, 472
TaiI	ACGT	2 cut(s)	396, 437
TaqI	TCGA	1 cut(s)	174
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	2 cut(s)	34, 139
TseI	GCWGC	2 cut(s)	371, 427
Tsp45I	GTSAC	2 cut(s)	34, 139
TspGWI	ACGGA	4 cut(s)	13, 60, 121, 145
TspRI	CASTG	1 cut(s)	258
Vha464I	CTTAAG	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.