Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7998998.1

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 465

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7998998.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ttcatcatgtgcttggtgcttgctggatgcgcggctgcaacggcaatagggttcgtggggcggtatgggaacagccacaccggttggactccgatttgtgatcactttgggaagttctgtcacagagtgttaatatctgtgattctgtcctacttgtccctcataattttgctgatgcttactgtcagctcagcaatcaagtctagacagattccggtagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

74

Amino Acids

8.0

Weight (kDa)

9.21

Isoelectric Point (pI)

24.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	2 cut(s)	32, 61
AdeI	CACNNNGTG	1 cut(s)	127
AgeI	ACCGGT	1 cut(s)	80
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	57
BclI	TGATCA	1 cut(s)	100
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	2 cut(s)	33, 36
BlpI	GCTNAGC	1 cut(s)	190
BlsI	GCNGC	2 cut(s)	34, 37
BmsI	GCATC	2 cut(s)	17, 165
Bpu1102I	GCTNAGC	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	80, 214
Bse118I	RCCGGY	1 cut(s)	80
BseGI	GGATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	81, 215
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	32, 61
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 41
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	80
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	3 cut(s)	35, 75, 189
CviKI_1	RGCY	3 cut(s)	35, 75, 189
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	127
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 66, 164
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	33, 36
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	33, 36
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	33, 36
HapII	CCGG	2 cut(s)	81, 215
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	88, 142, 211
HpaII	CCGG	2 cut(s)	81, 215
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 41
HpyF3I	CTNAG	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	9, 94
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	17, 165
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	131
MspI	CCGG	2 cut(s)	81, 215
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	29, 41
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	142, 211
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	34, 37
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	2 cut(s)	33, 36
Sau3AI	GATC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	82
SetI	ASST	1 cut(s)	191
SfaNI	GCATC	2 cut(s)	17, 165
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	2 cut(s)	32, 61
SspMI	CTAG	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	1 cut(s)	165
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	142, 211
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	203
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.