Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

13338447 .. 13340200

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G144900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCAGCATTGAAGCCAAGATTCAGCAGAACCCACCTCAGAAAACCCAAAATGTTTTTCTTGGAACCCAGATTTTCATGAGAACTTTCACAATGACTGCTACATTGGCTGCAACTTGGGTGACGGTCACAAACAAGCAGACCGCTCAGATTGTTGGCATAGAATTTGATGCTAGATATAACTATTCCCCTGCCTTCACGTTCTTTGCTTATGCAAATGCTGTCGTAAGTGCCTTTTCTTTGCTGTCCTTGTTCCTTGTTTTCCTTTTCCATCGCAAAGGCTCAAATCCTGCCAACTACTTCATCTTGTTCCTCCACGATTTGATGATGCTGTGCTTGTTGCTTGCTGGATGCTCTGCTGCGACTGCTATAGGGTACGTGGGGAAGTATGGGAACAGCCACTCGGGTTGGGCTCCAATCTGTGATCACTTTGGAAAATTCTGTAAAAGAGGGACCAATTCTATGGTTCTCTCTTACCTGTCTGTCATTTTCTTGCTCATGCTTACCATCAGCTCGGCCACCAAGTCCAGACAGATTCTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

182

Amino Acids

20.06

Weight (kDa)

9.54

Isoelectric Point (pI)

26.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	146
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	2 cut(s)	3, 516
AcsI	RAATTY	2 cut(s)	164, 437
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	513
AluI	AGCT	1 cut(s)	513
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	2 cut(s)	3, 516
ApeKI	GCWGC	2 cut(s)	110, 359
ApoI	RAATTY	2 cut(s)	164, 437
AspS9I	GGNCC	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	97, 346
BccI	CCATC	2 cut(s)	279, 515
BclI	TGATCA	1 cut(s)	424
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	2 cut(s)	111, 360
BlsI	GCNGC	2 cut(s)	112, 361
Bme18I	GGWCC	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	3 cut(s)	67, 414, 454
BmsI	GCATC	3 cut(s)	160, 318, 341
BsaAI	YACGTR	1 cut(s)	379
BseGI	GGATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	53, 161
BseXI	GCAGC	2 cut(s)	97, 346
BshFI	GGCC	2 cut(s)	5, 518
BsiHKCI	CYCGRG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	5, 518
BsoBI	CYCGRG	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	5, 518
BspCNI	CTCAG	2 cut(s)	52, 160
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	67, 414, 454
BsrBI	CCGCTC	1 cut(s)	146
BssMI	GATC	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	7, 345
BstDEI	CTNAG	2 cut(s)	39, 147
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 365
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	97, 346
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	5, 518
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	7, 345
CaiI	CAGNNNCTG	1 cut(s)	538
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	376
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CviAII	CATG	2 cut(s)	79, 499
CviJI	RGCY	8 cut(s)	5, 17, 110, 282, 399, 413, 513, 518
CviKI_1	RGCY	8 cut(s)	5, 17, 110, 282, 399, 413, 513, 518
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	39, 147
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	2 cut(s)	3, 516
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	415
FaeI	CATG	2 cut(s)	82, 502
FaiI	YATR	8 cut(s)	80, 161, 180, 213, 371, 390, 464, 500
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	2 cut(s)	78, 498
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	111, 360
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	2 cut(s)	111, 360
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	2 cut(s)	111, 360
HaeIII	GGCC	2 cut(s)	5, 518
Hin1II	CATG	2 cut(s)	82, 502
HinfI	GANTC	2 cut(s)	22, 535
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	42, 150
Hpy188III	TCNNGA	2 cut(s)	79, 528
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	200, 378
HpyCH4V	TGCA	2 cut(s)	113, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 365
HpyF3I	CTNAG	2 cut(s)	39, 147
HpySE526I	ACGT	2 cut(s)	200, 378
Hsp92II	CATG	2 cut(s)	82, 502
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	8 cut(s)	19, 83, 204, 303, 333, 491, 524, 541
Lsp1109I	GCAGC	2 cut(s)	97, 346
LweI	GCATC	3 cut(s)	160, 318, 341
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	2 cut(s)	200, 378
MaeIII	GTNAC	2 cut(s)	121, 127
MalI	GATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	146
MboI	GATC	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	164, 437, 457
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	48, 323, 443
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	107, 365
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	82, 502
NlaIV	GGNNCC	3 cut(s)	67, 414, 454
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	121, 127
PagI	TCATGA	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	22, 535
PkrI	GCNGC	2 cut(s)	112, 361
Ppu21I	YACGTR	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	67, 414, 454
PspPI	GGNCC	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SatI	GCNGC	2 cut(s)	111, 360
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	5 cut(s)	40, 203, 381, 480, 515
SfaNI	GCATC	3 cut(s)	160, 318, 341
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	453
Sse9I	AATT	3 cut(s)	164, 437, 457
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	203, 381
TasI	AATT	3 cut(s)	164, 437, 457
TfiI	GAWTC	2 cut(s)	22, 535
TseFI	GTSAC	2 cut(s)	121, 127
TseI	GCWGC	2 cut(s)	110, 359
Tsp45I	GTSAC	2 cut(s)	121, 127
TspDTI	ATGAA	2 cut(s)	67, 292
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	2 cut(s)	164, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.