Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

15490390 .. 15491371

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAATCACAGAATCCAAGTTCCAGCAAAACCCACCTCTGAAAACTCCTCTGAAAACCCAAAAGATTTTTCTTGGAGTCCAAATCTTCATGAGGACTGTCACAGTGGCTGCTACATTGGCTGCAACTTGGTTGATGGTCACCAACAAGCAGACCAGTCAGATTATTGGCATAGAATTTGATGCTCATTATTATTATTCACCTACCTTCAAGTTCTTTGCTTATGCAAATGCTGTTGTAAGTGCCTTCTGCTTGCTCTCCTTGTTCCTCGTTTTTCTTATCCACCACAATGGCTCGAATCCCGCCAACTACTTCGTCTTGTTCCTGCACGATTTGGTGATGCTGTGTTTGTTGATGGCTGGATGCTCGGCTGCAACTGCAATAGGGTACGTGGGGCAATATGGGAATAGCCACTCGGGCTGGGCACCAATTTGTGATCGATCTTACTTTGGGAAGTTCTGCAAAAGAGGGACTGATTCTGTGGTTCTCTCCTACTTGTCTGTCGTTTTCTTGCTCATGCTCACCATCAGCTCTGCAGCCAAGTCTGGAAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

186

Amino Acids

20.43

Weight (kDa)

9.24

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	1 cut(s)	531
AluI	AGCT	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	415
ApeKI	GCWGC	4 cut(s)	110, 122, 371, 536
ApoI	RAATTY	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	133, 192, 349, 514
AvaI	CYCGRG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	424
BbvI	GCAGC	4 cut(s)	97, 109, 358, 548
BccI	CCATC	3 cut(s)	130, 349, 533
BfmI	CTRYAG	1 cut(s)	534
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	4 cut(s)	111, 123, 372, 537
BlsI	GCNGC	4 cut(s)	112, 124, 373, 538
BmeT110I	CYCGRG	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	426
BmsI	GCATC	3 cut(s)	172, 330, 353
Bsa29I	ATCGAT	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	439
BseGI	GGATG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	4 cut(s)	97, 109, 358, 548
BseYI	CCCAGC	1 cut(s)	420
BsgI	GTGCAG	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	424
BshVI	ATCGAT	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	436, 440
BspACI	CCGC	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	436, 440
Bst4CI	ACNGT	2 cut(s)	100, 106
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	254
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	2 cut(s)	439, 443
BstMBI	GATC	2 cut(s)	436, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 377, 417
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	4 cut(s)	97, 109, 358, 548
BstXI	CCANNNNNNTGG	1 cut(s)	290
Bsu15I	ATCGAT	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	91, 517
CviJI	RGCY	9 cut(s)	110, 122, 294, 359, 371, 411, 420, 531, 539
CviKI_1	RGCY	9 cut(s)	110, 122, 294, 359, 371, 411, 420, 531, 539
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	2 cut(s)	438, 442
DpnII	GATC	2 cut(s)	436, 440
Eco88I	CYCGRG	1 cut(s)	415
Eco91I	GGTNACC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	139
FaeI	CATG	2 cut(s)	94, 520
FaiI	YATR	5 cut(s)	92, 173, 225, 402, 518
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	2 cut(s)	90, 516
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	111, 123, 372, 537
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	4 cut(s)	111, 123, 372, 537
GluI	GCNGC	4 cut(s)	111, 123, 372, 537
GsaI	CCCAGC	1 cut(s)	424
Hin1II	CATG	2 cut(s)	94, 520
HinfI	GANTC	4 cut(s)	14, 78, 298, 476
HphI	GGTGA	4 cut(s)	133, 192, 349, 514
Hpy188I	TCNGA	3 cut(s)	42, 54, 162
Hpy188III	TCNNGA	2 cut(s)	91, 546
HpyAV	CCTTC	2 cut(s)	217, 256
HpyCH4III	ACNGT	2 cut(s)	100, 106
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	7 cut(s)	125, 227, 328, 374, 380, 462, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 377, 417
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	94, 520
Kzo9I	GATC	2 cut(s)	436, 440
LpnPI	CCDG	6 cut(s)	38, 169, 338, 345, 406, 531
Lsp1109I	GCAGC	4 cut(s)	97, 109, 358, 548
LweI	GCATC	3 cut(s)	172, 330, 353
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	100, 139
MalI	GATC	2 cut(s)	438, 442
MboI	GATC	2 cut(s)	436, 440
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	2 cut(s)	176, 429
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	48, 60, 87, 278, 461
MslI	CAYNNNNRTG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	119, 377, 417
NdeII	GATC	2 cut(s)	436, 440
NlaIII	CATG	2 cut(s)	94, 520
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	2 cut(s)	100, 139
PagI	TCATGA	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	14, 298, 476
PkrI	GCNGC	4 cut(s)	112, 124, 373, 538
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Ppu21I	YACGTR	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	4 cut(s)	111, 123, 372, 537
Sau3AI	GATC	2 cut(s)	436, 440
SchI	GAGTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	5 cut(s)	40, 205, 209, 393, 533
SfaNI	GCATC	3 cut(s)	172, 330, 353
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	176, 429
SsiI	CCGC	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	100, 106
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	2 cut(s)	296, 439
TasI	AATT	2 cut(s)	176, 429
TfiI	GAWTC	3 cut(s)	14, 298, 476
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	100, 139
TseI	GCWGC	4 cut(s)	110, 122, 371, 536
Tsp45I	GTSAC	2 cut(s)	100, 139
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.