Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007859.1

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

6669 .. 7458

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007859.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcaaccattgaagccaaggcgcttcagccaaacccacctgtgagaacccaaaagctttttcttggtgcccaaatttgcttgaggactgttgccatggctactacattagctgcaacatggatcatgatcacaagcaaacagtccacagagattgttggcatagcctttgatgctagatatagctactcatctgccttcaagttcttggcttttgcaaatgctgttgtcagtgcctgttgtttagtgtccttgctccttgttttccttctccatctccaaggctcaaatcccaatcactacttcctcttgttcctccatgatttgttcatcatgtgcttggtgcttgctggatgcgcggctgcaacggcaatagggttcgtggggcggtatgggaacagccacaccggttggactccgatttgtgatcactttgggaagttctgtcacagagtgttaatatctgtgattctgtcctacttgtccctcataattttgctgatgcttactgtcagctcagcaatcaagtctagacagattccggtagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

9.23

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	1 cut(s)	359
AciI	CCGC	2 cut(s)	359, 388
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	454
AgeI	ACCGGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	14, 202
AjuI	GAANNNNNNNTTGG	4 cut(s)	45, 77, 287, 319
AluBI	AGCT	4 cut(s)	58, 113, 186, 516
AluI	AGCT	4 cut(s)	58, 113, 186, 516
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	113, 362
ApoI	RAATTY	1 cut(s)	75
AsiGI	ACCGGT	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	25, 359
BaeGI	GKGCMC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	100, 349
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	384
BclI	TGATCA	2 cut(s)	129, 427
BfaI	CTAG	2 cut(s)	177, 531
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	114, 360, 363
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	3 cut(s)	115, 361, 364
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	3 cut(s)	163, 344, 492
Bpu1102I	GCTNAGC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	18, 96, 280
BsaWI	WCCGGW	2 cut(s)	407, 541
Bse118I	RCCGGY	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	18, 96, 280
BseGI	GGATG	1 cut(s)	359
BseJI	GATNNNNATC	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	100, 349
Bsh1236I	CGCG	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	408, 542
BslFI	GGGAC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	123, 129, 427
Bsp1720I	GCTNAGC	1 cut(s)	517
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	2 cut(s)	359, 388
BspCNI	CTCAG	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	3 cut(s)	18, 96, 280
BssMI	GATC	3 cut(s)	123, 129, 427
BssT1I	CCWWGG	3 cut(s)	18, 96, 280
Bst4CI	ACNGT	3 cut(s)	91, 144, 511
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	517
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	359
BstFNI	CGCG	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 359
BstKTI	GATC	3 cut(s)	126, 132, 430
BstMBI	GATC	3 cut(s)	123, 129, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 356, 368
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	100, 349
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	237
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	2 cut(s)	25, 359
Cfr10I	RCCGGY	1 cut(s)	407
CspAI	ACCGGT	1 cut(s)	407
CspCI	CAANNNNNGTGG	4 cut(s)	136, 171, 392, 427
CviAII	CATG	5 cut(s)	97, 120, 127, 320, 334
DdeI	CTNAG	1 cut(s)	517
DpnI	GATC	3 cut(s)	125, 131, 429
DpnII	GATC	3 cut(s)	123, 129, 427
DraIII	CACNNNGTG	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	18, 96, 280
Eco57I	CTGAAG	1 cut(s)	11
EcoT14I	CCWWGG	3 cut(s)	18, 96, 280
ErhI	CCWWGG	3 cut(s)	18, 96, 280
FaeI	CATG	5 cut(s)	100, 123, 130, 323, 337
FaiI	YATR	9 cut(s)	98, 121, 128, 164, 183, 321, 335, 393, 491
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	5 cut(s)	96, 119, 126, 319, 333
FbaI	TGATCA	2 cut(s)	129, 427
Fnu4HI	GCNGC	3 cut(s)	114, 360, 363
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	114, 360, 363
FspBI	CTAG	2 cut(s)	177, 531
GlaI	GCGC	2 cut(s)	24, 358
GluI	GCNGC	3 cut(s)	114, 360, 363
HaeII	RGCGCY	1 cut(s)	26
HapII	CCGG	2 cut(s)	408, 542
HhaI	GCGC	2 cut(s)	25, 359
Hin1II	CATG	5 cut(s)	100, 123, 130, 323, 337
Hin6I	GCGC	2 cut(s)	23, 357
HinP1I	GCGC	2 cut(s)	23, 357
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	415, 469, 538
HpaII	CCGG	2 cut(s)	408, 542
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	2 cut(s)	127, 531
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	208, 278
HpyCH4III	ACNGT	3 cut(s)	91, 144, 511
HpyCH4V	TGCA	3 cut(s)	116, 218, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 356, 368
HpyF3I	CTNAG	1 cut(s)	517
Hsp92II	CATG	5 cut(s)	100, 123, 130, 323, 337
HspAI	GCGC	2 cut(s)	23, 357
Ksp22I	TGATCA	2 cut(s)	129, 427
Kzo9I	GATC	3 cut(s)	123, 129, 427
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	4 cut(s)	54, 250, 336, 421
Lsp1109I	GCAGC	2 cut(s)	100, 349
LweI	GCATC	3 cut(s)	163, 344, 492
MaeI	CTAG	2 cut(s)	177, 531
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	125, 131, 429
MboI	GATC	3 cut(s)	123, 129, 427
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	75, 492
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	4 cut(s)	78, 317, 326, 497
MseI	TTAA	1 cut(s)	458
MspI	CCGG	2 cut(s)	408, 542
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	173, 356, 368
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	3 cut(s)	123, 129, 427
NlaIII	CATG	5 cut(s)	100, 123, 130, 323, 337
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	469, 538
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	115, 361, 364
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	3 cut(s)	114, 360, 363
Sau3AI	GATC	3 cut(s)	123, 129, 427
SchI	GAGTC	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	43, 60, 115, 188, 518
SfaNI	GCATC	3 cut(s)	163, 344, 492
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	75, 492
SsiI	CCGC	2 cut(s)	359, 388
SspMI	CTAG	2 cut(s)	177, 531
StyI	CCWWGG	3 cut(s)	18, 96, 280
TaaI	ACNGT	3 cut(s)	91, 144, 511
TasI	AATT	2 cut(s)	75, 492
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	469, 538
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	113, 362
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	530
XspI	CTAG	2 cut(s)	177, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.