Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Forward (+)

27011921 .. 27013867

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTCAGAGGCGTGTAAAGAGAAAACTTCCTCTGCGCTCCCCAAAATGACATCTTCTTCAGGCCTTCCGATGTCAAGTCCACGGCAGCAGAGGATGAGTTTGTTGGTGGCTCAAGCCACTCTAAGAATCTCAGCCATCGTCTTCACATTAATCGCAATCTCTGTTATCGTCACCAACACCCAATCTGTCATCGTTTTTGGGTTCAAGTTCGAAGCACATTATACCTACTCAACTGCCTTCAAGTTCTTGGTTGGTGCTAATGCTGTGGTGTGTGCCTTCTCTGCACTGTCATTGATCTTCTTATCCTTGTTCGTAAGCCGTTCAGTGCCACAACAGCAGCAGCAGCAGCAGCAGCAGCTCAAAAACTATTTCTTTCTCTTGTTGCATGATGTGGTGATGATGGTGTTGATAATATCTGGATGTGCAGCTGCAACTGCAATCGGTTACGTGGGGCGCTATGGAGAGAAAAAAATGACTTGGCAGCCTACATGCGGCTATGTCTCCAAGTACTGCAACAGAATGTCCATCTCTCTTGCCTTCTCCTATTTGGCCTTCTTTGCCTACTTGCTTCTCACTTTCACATCTGCCCTCACTCTCGTGTCTCGCCCTACTACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

208

Amino Acids

22.84

Weight (kDa)

9.68

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	208, 244
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	2 cut(s)	361, 431
AluI	AGCT	2 cut(s)	361, 431
Alw26I	GTCTC	2 cut(s)	508, 609
AoxI	GGCC	2 cut(s)	64, 552
AseI	ATTAAT	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	40, 459
AsuHPI	GGTGA	2 cut(s)	166, 409
AsuII	TTCGAA	1 cut(s)	213
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	136
BccI	CCATC	3 cut(s)	146, 397, 536
BceAI	ACGGC	2 cut(s)	101, 306
BcoDI	GTCTC	2 cut(s)	508, 609
BfoI	RGCGCY	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	102, 428
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	147
BsgI	GTGCAG	2 cut(s)	270, 447
BshFI	GGCC	2 cut(s)	66, 554
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	508, 609
BsnI	GGCC	2 cut(s)	66, 554
Bsp119I	TTCGAA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	66, 554
BspCNI	CTCAG	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	297
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	125, 133
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	102, 428
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	2 cut(s)	40, 459
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	2 cut(s)	508, 609
BstMBI	GATC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	495
BstV2I	GAAGAC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	66, 554
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	102, 428
BtsIMutI	CAGTG	2 cut(s)	287, 333
CfoI	GCGC	2 cut(s)	40, 459
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	389, 492
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	125, 133
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	45
FaeI	CATG	2 cut(s)	392, 495
FaiI	YATR	5 cut(s)	225, 390, 462, 493, 501
FatI	CATG	2 cut(s)	388, 491
FokI	GGATG	2 cut(s)	109, 435
GlaI	GCGC	2 cut(s)	39, 458
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	66, 554
HhaI	GCGC	2 cut(s)	40, 459
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	392, 495
Hin6I	GCGC	2 cut(s)	38, 457
HinP1I	GCGC	2 cut(s)	38, 457
HinfI	GANTC	1 cut(s)	129
HphI	GGTGA	2 cut(s)	166, 409
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	10, 72
Hpy188III	TCNNGA	1 cut(s)	420
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	5 cut(s)	77, 250, 289, 550, 565
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	287, 388, 428, 434, 440, 516
HpyF3I	CTNAG	2 cut(s)	125, 133
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	392, 495
HspAI	GCGC	2 cut(s)	38, 457
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	48, 405
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	172, 446
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	48, 51, 136, 292
MnlI	CCTC	4 cut(s)	4, 43, 87, 602
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	431
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	392, 495
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	297
ScaI	AGTACT	1 cut(s)	512
SetI	ASST	4 cut(s)	230, 363, 433, 453
SfuI	TTCGAA	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	2 cut(s)	294, 333
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	2 cut(s)	294, 333
VspI	ATTAAT	1 cut(s)	152
XceI	RCATGY	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.