Rh7DG102700

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003826
Physical Location & Seq
Reverse (-)
8678094 .. 8678883
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG102700.1

Sequence Viewer

Length: 552 bp
ATGGCAACCATTGAAGCCAAGGCGCTTCAGCCAAACCCACCTGTGAGAACCCAAAAGCTTTTTCTTGGTGCCCAAATTTGCTTGAGGACTGTTGCCATGGCTACTACATTAGCTGCAACATGGATCATGATCACAAGCAAACAGTCCACAGAGATTGTTGGCATAGCCTTTGATGCTAGATATAGCTACTCATCTGCCTTCAAGTTCTTGGCTTTTGCAAATGCTGTTGTCAGTGCCTGTTGTTTAGTGTCCTTGCTCCTTGTTTTCCTTCTCCATCTCCAAGGCTCAAATCCCAATCACTACTTCCTCTTGTTCCTCCATGATTTGTTCATCATGTGCTTGGTGCTTGCTGGATGCGCGGCTGCAACGGCAATAGGGTTCGTGGGGCGGTATGGGAACAGCCACACCGGTTGGACTCCGATTTGTGATCACTTTGGGAAGTTCTGTCACAGAGTGTTAATATCTGTGATTCTGTCCTACTTGTCCCTCATAATTTTGCTGATGCTTACTGTCAGCTCAGCAATCAAGTCTAGACAGATTCCGGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

9.23

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 23 - 164 3.8e-36 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 359, 388
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 14, 202
AjuI GAANNNNNNNTTGG 4 cut(s) 45, 77, 287, 319
AluBI AGCT 4 cut(s) 58, 113, 186, 516
AluI AGCT 4 cut(s) 58, 113, 186, 516
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 113, 362
ApoI RAATTY 1 cut(s) 75
AsiGI ACCGGT 1 cut(s) 407
AspLEI GCGC 2 cut(s) 25, 359
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 100, 349
BccI CCATC 1 cut(s) 282
BceAI ACGGC 1 cut(s) 384
BclI TGATCA 2 cut(s) 129, 427
BfaI CTAG 2 cut(s) 177, 531
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 3 cut(s) 114, 360, 363
BlpI GCTNAGC 1 cut(s) 517
BlsI GCNGC 3 cut(s) 115, 361, 364
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 3 cut(s) 163, 344, 492
Bpu1102I GCTNAGC 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 18, 96, 280
BsaWI WCCGGW 2 cut(s) 407, 541
Bse118I RCCGGY 1 cut(s) 407
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 18, 96, 280
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 100, 349
Bsh1236I CGCG 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 68
BshTI ACCGGT 1 cut(s) 407
BsiSI CCGG 2 cut(s) 408, 542
BslFI GGGAC 1 cut(s) 469
BsmFI GGGAC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 3 cut(s) 123, 129, 427
Bsp1720I GCTNAGC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 2 cut(s) 359, 388
BspCNI CTCAG 1 cut(s) 530
BspFNI CGCG 1 cut(s) 359
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 18, 96, 280
BssMI GATC 3 cut(s) 123, 129, 427
BssT1I CCWWGG 3 cut(s) 18, 96, 280
Bst4CI ACNGT 3 cut(s) 91, 144, 511
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 517
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 359
BstKTI GATC 3 cut(s) 126, 132, 430
BstMBI GATC 3 cut(s) 123, 129, 427
BstMWI GCNNNNNNNGC 3 cut(s) 173, 356, 368
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 100, 349
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 126
CfoI GCGC 2 cut(s) 25, 359
Cfr10I RCCGGY 1 cut(s) 407
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 4 cut(s) 136, 171, 392, 427
CviAII CATG 5 cut(s) 97, 120, 127, 320, 334
DdeI CTNAG 1 cut(s) 517
DpnI GATC 3 cut(s) 125, 131, 429
DpnII GATC 3 cut(s) 123, 129, 427
DraIII CACNNNGTG 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 18, 96, 280
Eco57I CTGAAG 1 cut(s) 11
EcoT14I CCWWGG 3 cut(s) 18, 96, 280
ErhI CCWWGG 3 cut(s) 18, 96, 280
FaeI CATG 5 cut(s) 100, 123, 130, 323, 337
FaiI YATR 9 cut(s) 98, 121, 128, 164, 183, 321, 335, 393, 491
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 96, 119, 126, 319, 333
FbaI TGATCA 2 cut(s) 129, 427
Fnu4HI GCNGC 3 cut(s) 114, 360, 363
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 114, 360, 363
FspBI CTAG 2 cut(s) 177, 531
GlaI GCGC 2 cut(s) 24, 358
GluI GCNGC 3 cut(s) 114, 360, 363
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 2 cut(s) 408, 542
HhaI GCGC 2 cut(s) 25, 359
Hin1II CATG 5 cut(s) 100, 123, 130, 323, 337
Hin6I GCGC 2 cut(s) 23, 357
HinP1I GCGC 2 cut(s) 23, 357
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 3 cut(s) 415, 469, 538
HpaII CCGG 2 cut(s) 408, 542
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 127, 531
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 208, 278
HpyCH4III ACNGT 3 cut(s) 91, 144, 511
HpyCH4V TGCA 3 cut(s) 116, 218, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 356, 368
HpyF3I CTNAG 1 cut(s) 517
Hsp92II CATG 5 cut(s) 100, 123, 130, 323, 337
HspAI GCGC 2 cut(s) 23, 357
Ksp22I TGATCA 2 cut(s) 129, 427
Kzo9I GATC 3 cut(s) 123, 129, 427
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 4 cut(s) 54, 250, 336, 421
Lsp1109I GCAGC 2 cut(s) 100, 349
LweI GCATC 3 cut(s) 163, 344, 492
MaeI CTAG 2 cut(s) 177, 531
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 125, 131, 429
MboI GATC 3 cut(s) 123, 129, 427
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 2 cut(s) 75, 492
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 4 cut(s) 78, 317, 326, 497
MseI TTAA 1 cut(s) 458
MspI CCGG 2 cut(s) 408, 542
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 173, 356, 368
NcoI CCATGG 1 cut(s) 96
NdeII GATC 3 cut(s) 123, 129, 427
NlaIII CATG 5 cut(s) 100, 123, 130, 323, 337
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 446
PagI TCATGA 1 cut(s) 126
PfeI GAWTC 2 cut(s) 469, 538
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 3 cut(s) 115, 361, 364
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 3 cut(s) 114, 360, 363
Sau3AI GATC 3 cut(s) 123, 129, 427
SchI GAGTC 1 cut(s) 409
SduI GDGCHC 1 cut(s) 73
SetI ASST 5 cut(s) 43, 60, 115, 188, 518
SfaNI GCATC 3 cut(s) 163, 344, 492
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 2 cut(s) 75, 492
SsiI CCGC 2 cut(s) 359, 388
SspMI CTAG 2 cut(s) 177, 531
StyI CCWWGG 3 cut(s) 18, 96, 280
TaaI ACNGT 3 cut(s) 91, 144, 511
TasI AATT 2 cut(s) 75, 492
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 469, 538
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 113, 362
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 530
XspI CTAG 2 cut(s) 177, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.