Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

605256 .. 606396

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1009800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGTCAGAGACGCCCAAAGAGAATAGCTCCTCCGTCCTCCAAGTCACTTCTTCAGGCGTACCACGGCGGAGGATGTCTTTGTTGACCGCTCAAGTTGCTCTCAGAATCTCAGCCATTGTCTTCACACTCATCGCCATCTCCGTTACGGTCACCAACAGCCAATCCGTCGTCGTGTTCGGATTCAAGTTCGAAGCTCACTACTCCTACTCAACTGCCTTCAAGTTCTTGGTTGGTGCTAATGTTGTGGTGTGTGCCTTCTCAGTGCTCTCATTGATCTTCCTATCCTTCTTCTTACGCCGTTCTCCGTCTCAACACCTCAAAAACTACTTCGTTCTCTTCTTGCACGACATGGTGATGATGGTGATGATGATATCCGGGTGCGCAGCCGCGACCGCAATCGGGTACGTGGGGAAGTATGGGGAGAAGAAAATGACTTGGCAGCCAACATGCGGTTATGTGAAGGAGTTCTGCAACAAAATGACCATTTCTCTTGCGTTTTCTTACCTGGCTTTCTCTGCCTACTTGTTTCTCACTCTCATAGCTGCTCATAATCTCATGCCTCGACCTACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

193

Amino Acids

21.3

Weight (kDa)

9.59

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	27 - 173	7.2e-40	Casparian strip membrane protein domain
MARVEL	PF01284	28 - 179	3.8e-07	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	392
AciI	CCGC	5 cut(s)	70, 90, 390, 396, 453
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	2 cut(s)	5, 14
AfaI	GTAC	2 cut(s)	63, 407
AfiI	CCNNNNNNNGG	2 cut(s)	402, 452
AgsI	TTSAA	2 cut(s)	187, 223
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	30, 197, 545
AluI	AGCT	3 cut(s)	30, 197, 545
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	5, 315
ApeKI	GCWGC	3 cut(s)	386, 442, 545
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	145, 367, 376
AsuII	TTCGAA	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	398, 454, 532
BccI	CCATC	2 cut(s)	146, 355
BceAI	ACGGC	2 cut(s)	83, 285
BciT130I	CCWGG	1 cut(s)	509
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	5, 315
BisI	GCNGC	4 cut(s)	387, 390, 443, 546
BlsI	GCNGC	4 cut(s)	388, 391, 444, 547
Bme1390I	CCNGG	2 cut(s)	379, 509
BmrFI	CCNGG	2 cut(s)	379, 509
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	2 cut(s)	5, 14
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 452
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	402, 452
BseMII	CTCAG	3 cut(s)	118, 126, 276
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	398, 454, 532
Bsh1236I	CGCG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	402, 452
BsmAI	GTCTC	2 cut(s)	5, 315
BsmBI	CGTCTC	2 cut(s)	5, 315
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	5 cut(s)	70, 90, 390, 396, 453
BspCNI	CTCAG	3 cut(s)	117, 125, 275
BspFNI	CGCG	1 cut(s)	392
BspT104I	TTCGAA	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	2 cut(s)	5, 14
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	2 cut(s)	5, 14
BstBAI	YACGTR	1 cut(s)	409
BstBI	TTCGAA	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	104, 112, 262
BstDSI	CCRYGG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	5, 315
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	453
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	377, 507
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	398, 454, 532
BstV2I	GAAGAC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	270
CfoI	GCGC	1 cut(s)	386
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	62, 406
CviAII	CATG	3 cut(s)	352, 450, 559
CviJI	RGCY	8 cut(s)	30, 116, 162, 197, 389, 445, 512, 545
CviKI_1	RGCY	8 cut(s)	30, 116, 162, 197, 389, 445, 512, 545
CviQI	GTAC	2 cut(s)	62, 406
DdeI	CTNAG	3 cut(s)	104, 112, 262
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	5, 315
FaeI	CATG	3 cut(s)	355, 453, 562
FaiI	YATR	7 cut(s)	353, 420, 451, 459, 542, 552, 560
FatI	CATG	3 cut(s)	351, 449, 558
Fnu4HI	GCNGC	4 cut(s)	387, 390, 443, 546
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	4 cut(s)	387, 390, 443, 546
FspI	TGCGCA	1 cut(s)	385
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	4 cut(s)	387, 390, 443, 546
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	386
Hin1I	GRCGYC	2 cut(s)	5, 14
Hin1II	CATG	3 cut(s)	355, 453, 562
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	108, 183
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	3 cut(s)	145, 367, 376
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	10, 107, 182
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	4 cut(s)	229, 268, 298, 457
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	346, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
HpyF3I	CTNAG	3 cut(s)	104, 112, 262
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	2 cut(s)	5, 14
Hsp92II	CATG	3 cut(s)	355, 453, 562
HspAI	GCGC	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	42, 391, 494, 521
Lsp1109I	GCAGC	3 cut(s)	398, 454, 532
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	46, 145, 151
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	45, 115, 271, 283, 331, 439
MhlI	GDGCHC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	43, 50, 66, 329, 573
MroXI	GAANNNNTTC	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	379, 509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	355, 453, 562
NmuCI	GTSAC	2 cut(s)	46, 151
NsbI	TGCGCA	1 cut(s)	385
NspI	RCATGY	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	108, 183
PkrI	GCNGC	4 cut(s)	388, 391, 444, 547
Ppu21I	YACGTR	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	507
PspEI	GGTNACC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	507
RsaI	GTAC	2 cut(s)	63, 407
RsaNI	GTAC	2 cut(s)	62, 406
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	4 cut(s)	387, 390, 443, 546
Sau3AI	GATC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	379, 509
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	32, 199, 321, 411, 510, 547, 571
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	5 cut(s)	70, 90, 390, 396, 453
StyD4I	CCNGG	2 cut(s)	377, 507
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	192, 565
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	108, 183
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	46, 151
TseI	GCWGC	3 cut(s)	386, 442, 545
Tsp45I	GTSAC	2 cut(s)	46, 151
TspGWI	ACGGA	4 cut(s)	25, 133, 157, 297
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.