Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003826

Physical Location & Seq

Genomic Coordinates Reverse (-)

310660 .. 311415

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTACAGAGACGCCGAAAGAGAATAGCTTATCCGTCCTCCACGTCACTTCTTCAGGCGTACCACGGCGGAGGATGTCTTTGTTGACCGCTCAAGTTGCTCTCAGAATCTCAGCCTTTGTCTTCACACTCATCGCCATCTCCGTTACAGTCACCAACAGCCAATCCGTCGTCGTGTTCGGATTCAAGTTCGAAGCTCACTACTCCTACTCAACTGCCTTCAAGTTCTTGGTTGGTGCTAATGTTGTGGTGTGTGCCTTCTCAGTGCTCTCATTGATCTTCCTATCCTTCTTCTTGCGCCGTTCTCCGTCTCAACACCTCAAAAACTATTTCGTTCTCTTCATGCACGACACGGTGATGATGGTGATGATGATATCCGGATGCGCAGCTGCGACCGCAATCGGGTACGTGGGGAAGTATGGAGAGAAGAAAATGACTTGGCAGCCAACATGCGGTTATGTGAAGGAGTTCTGCAACAAAATGACCATTTCTCTTGCGTTTTCTTACCTGGCTTTCTCTGCCTACTTGCTTCTCACTCTCACAGCTGCTCATAATCTCATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

189

Amino Acids

20.84

Weight (kDa)

9.59

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25040
fragaria_vesca	FvH4_5g09090 FvH4_6g54070
malus_domestica	MD06G1133900.v1.1 MD09G1005700.v1.1 MD14G1150200.v1.1 MD17G1009800.v1.1
prunus_persica	Prupe.3G311300_v2.0.a1 Prupe.5G144900_v2.0.a1
pyrus_communis	pycom06g12510 pycom111g00410 pycom14g12480 pycom17g00440
rosa_chinensis	RchiOBHm_Chr2g0176261 RchiOBHm_Chr7g0189121
rosa_laevigata	RLG00000004632 RLG00000022395
rosa_multiflora	Rmu_co7998998.1_g000002 Rmu_sc0000405.1_g000021 Rmu_sc0007859.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076640 Rroxscaffold_3G00265770
rosa_rugosa	Rorug02G0592400 Rorug06G0496100
rosa_samantha	Rh2AG670800 Rh2BG682300 Rh2CG645100 Rh2DG695900 Rh7AG100700 Rh7BG103400 Rh7CG104600 Rh7DG102700
rosa_wichuraiana	Rw2G055030 Rw7G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	377
AciI	CCGC	4 cut(s)	70, 90, 396, 453
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	63, 407
AfiI	CCNNNNNNNGG	2 cut(s)	402, 452
AgsI	TTSAA	2 cut(s)	187, 223
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	4 cut(s)	30, 197, 389, 545
AluI	AGCT	4 cut(s)	30, 197, 389, 545
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	5, 315
Aor13HI	TCCGGA	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	386, 389, 442, 545
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	300, 386
AsuHPI	GGTGA	3 cut(s)	145, 367, 376
AsuII	TTCGAA	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	376, 398, 454, 532
BccI	CCATC	2 cut(s)	146, 355
BceAI	ACGGC	2 cut(s)	83, 285
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	5, 315
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	4 cut(s)	387, 390, 443, 546
BlsI	GCNGC	4 cut(s)	388, 391, 444, 547
Bme1390I	CCNGG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	115
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 452
BseAI	TCCGGA	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	81, 386
BseLI	CCNNNNNNNGG	2 cut(s)	402, 452
BseMII	CTCAG	3 cut(s)	118, 126, 276
BseXI	GCAGC	4 cut(s)	376, 398, 454, 532
Bsh1285I	CGRYCG	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	402, 452
BsmAI	GTCTC	2 cut(s)	5, 315
BsmBI	CGTCTC	2 cut(s)	5, 315
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	4 cut(s)	70, 90, 396, 453
BspCNI	CTCAG	3 cut(s)	117, 125, 275
BspEI	TCCGGA	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	151, 355
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	409
BstBI	TTCGAA	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	104, 112, 262
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	81, 386
BstHHI	GCGC	2 cut(s)	300, 386
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	5, 315
BstMBI	GATC	1 cut(s)	276
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	4 cut(s)	376, 398, 454, 532
BstV2I	GAAGAC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	81, 386
BtsIMutI	CAGTG	1 cut(s)	270
CfoI	GCGC	2 cut(s)	300, 386
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	62, 406
CviAII	CATG	3 cut(s)	343, 450, 559
CviJI	RGCY	9 cut(s)	5, 30, 116, 162, 197, 389, 445, 512, 545
CviKI_1	RGCY	9 cut(s)	5, 30, 116, 162, 197, 389, 445, 512, 545
CviQI	GTAC	2 cut(s)	62, 406
DdeI	CTNAG	3 cut(s)	104, 112, 262
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	5, 315
FaeI	CATG	3 cut(s)	346, 453, 562
FaiI	YATR	6 cut(s)	344, 420, 451, 459, 552, 560
FatI	CATG	3 cut(s)	342, 449, 558
Fnu4HI	GCNGC	4 cut(s)	387, 390, 443, 546
FokI	GGATG	2 cut(s)	88, 393
Fsp4HI	GCNGC	4 cut(s)	387, 390, 443, 546
FspI	TGCGCA	1 cut(s)	385
GlaI	GCGC	2 cut(s)	299, 385
GluI	GCNGC	4 cut(s)	387, 390, 443, 546
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	2 cut(s)	300, 386
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	346, 453, 562
Hin6I	GCGC	2 cut(s)	298, 384
HinP1I	GCGC	2 cut(s)	298, 384
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	108, 183
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	3 cut(s)	145, 367, 376
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	107, 182
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyAV	CCTTC	4 cut(s)	229, 268, 298, 457
HpyCH4III	ACNGT	2 cut(s)	151, 355
HpyCH4IV	ACGT	2 cut(s)	45, 408
HpyCH4V	TGCA	2 cut(s)	346, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
HpyF3I	CTNAG	3 cut(s)	104, 112, 262
HpySE526I	ACGT	2 cut(s)	45, 408
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	346, 453, 562
HspAI	GCGC	2 cut(s)	298, 384
Kpn2I	TCCGGA	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	4 cut(s)	42, 391, 494, 521
Lsp1109I	GCAGC	4 cut(s)	376, 398, 454, 532
LweI	GCATC	1 cut(s)	371
MaeII	ACGT	2 cut(s)	45, 408
MaeIII	GTNAC	3 cut(s)	46, 145, 151
MalI	GATC	1 cut(s)	278
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	45, 115, 271, 283, 331, 439
MhlI	GDGCHC	1 cut(s)	270
MnlI	CCTC	3 cut(s)	50, 66, 329
MroI	TCCGGA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	389, 545
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	3 cut(s)	98, 395, 518
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	346, 453, 562
NmuCI	GTSAC	2 cut(s)	46, 151
NsbI	TGCGCA	1 cut(s)	385
NspI	RCATGY	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	108, 183
PkrI	GCNGC	4 cut(s)	388, 391, 444, 547
Ppu21I	YACGTR	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PvuII	CAGCTG	2 cut(s)	389, 545
RsaI	GTAC	2 cut(s)	63, 407
RsaNI	GTAC	2 cut(s)	62, 406
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	4 cut(s)	387, 390, 443, 546
Sau3AI	GATC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	8 cut(s)	32, 48, 199, 321, 391, 411, 510, 547
SfaNI	GCATC	1 cut(s)	371
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	4 cut(s)	70, 90, 396, 453
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	151, 355
TaiI	ACGT	2 cut(s)	48, 411
TaqI	TCGA	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	108, 183
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	46, 151
TseI	GCWGC	4 cut(s)	386, 389, 442, 545
Tsp45I	GTSAC	2 cut(s)	46, 151
TspDTI	ATGAA	1 cut(s)	331
TspGWI	ACGGA	4 cut(s)	25, 133, 157, 297
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.