Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

3084441 .. 3085237

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1046700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCAAGCACTTGGTTGTGTTCAAGTGAAGCAGTCAAAAGTTGCTGTGAGGGAGCAATTTGGGAAGTTTGATGGTGTGCTTAAACCAGGATGCCACTGCATGCCCTGGTGTTTCGGGTACAAGGTAGCCGGTGAGCTCTCTCTGCGTGTGCGGCAACTTGAAGTTCGATGTGAAACCAAAACCAAGGATAATGTGTTTGTGAATGTGGTTGCGTCGATTCAATATCGCGCCTTGCCAGACAAGATACCGGATGCTTTCTACAAGCTCTCGAACGCCAACTCACAGATTCAGGCCTTTGTGTTTGATGGTAAGACTACAATGCGATTGGTAGAATTCTTGCTTGTACTAGTTGATCAACAGCTAATGCGTTGCTATTCTTTGCGTAACATTCGTCGAGAACGGTTATTAGGGCAAGTGTGCCGAAATTGGAGGTTGATACCGTCTTTGAGCAGAAGAGTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

156

Amino Acids

17.83

Weight (kDa)

9.85

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 100	2.2e-11	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	2 cut(s)	122, 348
AgsI	TTSAA	3 cut(s)	26, 164, 224
AhlI	ACTAGT	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	88, 107
AluBI	AGCT	3 cut(s)	139, 268, 364
AluI	AGCT	3 cut(s)	139, 268, 364
Alw21I	GWGCWC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BccI	CCATC	2 cut(s)	68, 302
BciT130I	CCWGG	2 cut(s)	90, 109
BclI	TGATCA	1 cut(s)	355
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	90, 109
BmrFI	CCNGG	2 cut(s)	90, 109
BmsI	GCATC	2 cut(s)	83, 244
BsaJI	CCNNGG	2 cut(s)	107, 186
BsaWI	WCCGGW	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	90, 109
BseDI	CCNNGG	2 cut(s)	107, 186
BseGI	GGATG	2 cut(s)	98, 259
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	132, 251
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	107, 186
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	90, 109
Bst4CI	ACNGT	2 cut(s)	405, 444
Bst6I	CTCTTC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	98, 259
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 154
BstNI	CCWGG	2 cut(s)	90, 109
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	88, 107
BstUI	CGCG	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	98, 259
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	104
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	131
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	121, 347
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	131, 139, 268, 296, 364
CviKI_1	RGCY	5 cut(s)	131, 139, 268, 296, 364
CviQI	GTAC	2 cut(s)	121, 347
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	88, 107
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 466
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	105, 266
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	132, 251
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	220, 289
HpaII	CCGG	2 cut(s)	132, 251
HphI	GGTGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	271, 398
Hpy99I	CGWCG	2 cut(s)	220, 399
HpyCH4III	ACNGT	2 cut(s)	405, 444
HpyCH4V	TGCA	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 154
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	75, 94, 102, 121, 145, 252, 264, 278
LweI	GCATC	2 cut(s)	83, 244
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	386, 460
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	3 cut(s)	59, 335, 427
MnlI	CCTC	2 cut(s)	45, 426
MseI	TTAA	1 cut(s)	84
MspI	CCGG	2 cut(s)	132, 251
MspR9I	CCNGG	2 cut(s)	90, 109
MvaI	CCWGG	2 cut(s)	90, 109
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	145, 154
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	460
NspI	RCATGY	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	220, 289
PkrI	GCNGC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	88, 107
PspGI	CCWGG	2 cut(s)	88, 107
RsaI	GTAC	2 cut(s)	122, 348
RsaNI	GTAC	2 cut(s)	121, 347
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	90, 109
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	129, 141, 270, 366, 437
SfaNI	GCATC	2 cut(s)	83, 244
SpeI	ACTAGT	1 cut(s)	349
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	59, 335, 427
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	88, 107
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	405, 444
TaqI	TCGA	4 cut(s)	169, 218, 272, 397
TasI	AATT	3 cut(s)	59, 335, 427
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	220, 289
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspRI	CASTG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.