RNA pseudourine synthase 3
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1046700.v1.1 |
| pyrus_communis | pycom111g03710 |
| rosa_chinensis | RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431 |
| rosa_laevigata | RLG00000033406 |
| rosa_multiflora | Rmu_co8039672.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330 |
| rosa_rugosa | Rorug01G0308200 Rorug05G0026500 Rorug06G0035300 |
| rosa_samantha | Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100 |
| rosa_wichuraiana | Rw3G019330 Rw6G013640 Rw6G013670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 134 |
| AluBI | AGCT | 2 cut(s) | 68, 203 |
| AluI | AGCT | 2 cut(s) | 68, 203 |
| AspLEI | GCGC | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 104 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| BbsI | GAAGAC | 1 cut(s) | 32 |
| BfaI | CTAG | 1 cut(s) | 150 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmgT120I | GGNCC | 1 cut(s) | 104 |
| BmsI | GCATC | 2 cut(s) | 110, 169 |
| BpiI | GAAGAC | 1 cut(s) | 32 |
| Bpu10I | CCTNAGC | 1 cut(s) | 199 |
| Bse118I | RCCGGY | 1 cut(s) | 76 |
| BseGI | GGATG | 1 cut(s) | 125 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 76 |
| BssAI | RCCGGY | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 2 cut(s) | 205, 209 |
| BstDEI | CTNAG | 1 cut(s) | 199 |
| BstF5I | GGATG | 1 cut(s) | 125 |
| BstHHI | GCGC | 1 cut(s) | 189 |
| BstV2I | GAAGAC | 1 cut(s) | 32 |
| BtsCI | GGATG | 1 cut(s) | 125 |
| Cac8I | GCNNGC | 2 cut(s) | 205, 209 |
| CfoI | GCGC | 1 cut(s) | 189 |
| Cfr10I | RCCGGY | 1 cut(s) | 76 |
| Cfr13I | GGNCC | 1 cut(s) | 104 |
| CviAII | CATG | 1 cut(s) | 126 |
| CviJI | RGCY | 7 cut(s) | 37, 47, 68, 80, 153, 203, 207 |
| CviKI_1 | RGCY | 7 cut(s) | 37, 47, 68, 80, 153, 203, 207 |
| DdeI | CTNAG | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| FaeI | CATG | 1 cut(s) | 129 |
| FaiI | YATR | 3 cut(s) | 110, 127, 219 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FatI | CATG | 1 cut(s) | 125 |
| FokI | GGATG | 1 cut(s) | 132 |
| FspBI | CTAG | 1 cut(s) | 150 |
| GlaI | GCGC | 1 cut(s) | 188 |
| HapII | CCGG | 1 cut(s) | 77 |
| HhaI | GCGC | 1 cut(s) | 189 |
| Hin1II | CATG | 1 cut(s) | 129 |
| Hin6I | GCGC | 1 cut(s) | 187 |
| HinP1I | GCGC | 1 cut(s) | 187 |
| HindIII | AAGCTT | 1 cut(s) | 66 |
| HinfI | GANTC | 1 cut(s) | 194 |
| HpaII | CCGG | 1 cut(s) | 77 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 57 |
| HpyCH4V | TGCA | 1 cut(s) | 211 |
| HpyF3I | CTNAG | 1 cut(s) | 199 |
| Hsp92II | CATG | 1 cut(s) | 129 |
| HspAI | GCGC | 1 cut(s) | 187 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| LpnPI | CCDG | 3 cut(s) | 42, 90, 189 |
| LweI | GCATC | 2 cut(s) | 110, 169 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MboII | GAAGA | 1 cut(s) | 37 |
| MluCI | AATT | 1 cut(s) | 134 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 1 cut(s) | 27 |
| MspI | CCGG | 1 cut(s) | 77 |
| NlaIII | CATG | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 194 |
| PspPI | GGNCC | 1 cut(s) | 104 |
| Sau96I | GGNCC | 1 cut(s) | 104 |
| SetI | ASST | 3 cut(s) | 9, 70, 205 |
| SfaNI | GCATC | 2 cut(s) | 110, 169 |
| SinI | GGWCC | 1 cut(s) | 104 |
| Sse9I | AATT | 1 cut(s) | 134 |
| SspMI | CTAG | 1 cut(s) | 150 |
| TasI | AATT | 1 cut(s) | 134 |
| TfiI | GAWTC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XspI | CTAG | 1 cut(s) | 150 |