Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

45912284 .. 45916587

Gene Structure 4304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG368100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCAGAGGTACTAGGCATTGGTTATGGGGTCGCCCTAGGAAAAGGAAGGCTTAATTTTGTGCTCCTCGATCTTATGAAGGTGCTTCTTGACGATGGGAAGACGGAGAGGCTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTATGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAATGGATGCTCATGGATTGAATTACAACTACTCACTAGCCAAAAGCATCAGGACTTTGGTATGGTGTTAAGAACATCGAGTAATGGAGTCGACTCAGAAGAAATCATAGACCAGCTTCAATGGCATAGGTTGTCTCAAGAAGAATGTGTCAACATTGATACAGTTATTGGCATTGATAAAAAACCTAAAAACCAAGTCAAGCCATATGGTCTAGATAATGAAACTACTGGAGAGCTGAGAGAGATCCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

5.04

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	469
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	209, 251, 350
AluBI	AGCT	3 cut(s)	143, 346, 466
AluI	AGCT	3 cut(s)	143, 346, 466
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	469
AspA2I	CCTAGG	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
AvrII	CCTAGG	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	5 cut(s)	14, 38, 225, 267, 443
BlnI	CCTAGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmsI	GCATC	3 cut(s)	185, 227, 286
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	200, 242
BseMII	CTCAG	2 cut(s)	339, 458
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	70, 474
BspCNI	CTCAG	2 cut(s)	338, 459
BspPI	GGATC	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	70, 474
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	394
BstDEI	CTNAG	2 cut(s)	325, 467
BstF5I	GGATG	2 cut(s)	200, 242
BstKTI	GATC	2 cut(s)	73, 477
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	2 cut(s)	70, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	200, 242
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	201, 243
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	325, 467
DpnI	GATC	2 cut(s)	72, 476
DpnII	GATC	2 cut(s)	70, 474
Eco130I	CCWWGG	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	204, 246
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	2 cut(s)	200, 242
FauNDI	CATATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	2 cut(s)	207, 249
FspBI	CTAG	5 cut(s)	14, 38, 225, 267, 443
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	2 cut(s)	204, 246
HincII	GTYRAC	2 cut(s)	322, 382
HindII	GTYRAC	2 cut(s)	322, 382
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	2 cut(s)	318, 323
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	322, 382
Hpy188I	TCNGA	2 cut(s)	7, 328
Hpy188III	TCNNGA	6 cut(s)	89, 132, 281, 368, 443, 478
Hpy8I	GTNNAC	2 cut(s)	322, 382
HpyAV	CCTTC	2 cut(s)	42, 73
HpyCH4III	ACNGT	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	325, 467
Hsp92II	CATG	2 cut(s)	204, 246
Kzo9I	GATC	2 cut(s)	70, 474
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	117, 165, 266, 356, 444
LweI	GCATC	3 cut(s)	185, 227, 286
MaeI	CTAG	5 cut(s)	14, 38, 225, 267, 443
MalI	GATC	2 cut(s)	72, 476
MboI	GATC	2 cut(s)	70, 474
MboII	GAAGA	3 cut(s)	112, 341, 383
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	3 cut(s)	55, 209, 251
MlyI	GAGTC	2 cut(s)	317, 327
MnlI	CCTC	2 cut(s)	77, 102
MseI	TTAA	2 cut(s)	54, 299
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	2 cut(s)	70, 474
NlaIII	CATG	2 cut(s)	204, 246
PleI	GAGTC	2 cut(s)	317, 326
PpsI	GAGTC	2 cut(s)	317, 326
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	54, 299
Sau3AI	GATC	2 cut(s)	70, 474
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	2 cut(s)	317, 327
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	7 cut(s)	12, 84, 145, 348, 362, 418, 468
SfaNI	GCATC	3 cut(s)	185, 227, 286
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	55, 209, 251
SspMI	CTAG	5 cut(s)	14, 38, 225, 267, 443
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	69, 308, 321
TasI	AATT	3 cut(s)	55, 209, 251
Tru1I	TTAA	2 cut(s)	54, 299
Tru9I	TTAA	2 cut(s)	54, 299
TspDTI	ATGAA	2 cut(s)	92, 465
TspGWI	ACGGA	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	442
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	321
XspI	CTAG	5 cut(s)	14, 38, 225, 267, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.