Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

25259823 .. 25262791

Gene Structure 2969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTACGGGTATGACAAATCAAAATGATGGTTGGGCCGACAGCAAAGGGATCTTCATTTTAAGAGGTGGCCTTAGTTATTTTGCCACGAATAAGGGGAGCGGCAATAGTAGTCCTAAAGTCCAAATAACCTTTAGCAAGCTCAAAGATATCGCAACAGCTGCTCCGGCTGTTGGCGCTAACATATCCAAGCCAAATCCTAAAGACACAGATGCAACTTCTAAAAGTTCCTCACAAGATGGCCAGACAAAGAGGGACTCAGATTACTCTTCAAATGAGAATTGGCGCCATGATGAGCCATTATCTATAGACAGTGCAGATAAGATTGATCTGTTTGGATCTTCTACTGTTCATAGTTTCATCTCAATTGATGGACTTTGGTATGGTGTTAAGAACATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.37

Weight (kDa)

5.62

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	59, 346
AcoI	YGGCCR	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	273
AluBI	AGCT	2 cut(s)	142, 161
AluI	AGCT	2 cut(s)	142, 161
AlwI	GGATC	2 cut(s)	59, 346
AoxI	GGCC	3 cut(s)	36, 70, 241
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	179, 288
AspS9I	GGNCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	23, 233, 365
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	2 cut(s)	180, 289
BisI	GCNGC	2 cut(s)	103, 162
BlsI	GCNGC	2 cut(s)	104, 163
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	287
BmsI	GCATC	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	38, 72, 243
BshNI	GGYRCC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	38, 72, 243
Bsp143I	GATC	3 cut(s)	51, 328, 338
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	3 cut(s)	38, 72, 243
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	59, 346
BspT107I	GGYRCC	1 cut(s)	285
BsrBI	CCGCTC	1 cut(s)	102
BssMI	GATC	3 cut(s)	51, 328, 338
BssNI	GRCGYC	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	314, 349
Bst6I	CTCTTC	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	74, 259
BstH2I	RGCGCY	2 cut(s)	180, 289
BstHHI	GCGC	2 cut(s)	179, 288
BstKTI	GATC	3 cut(s)	54, 331, 341
BstMBI	GATC	3 cut(s)	51, 328, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 167, 176
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	51, 338
BstYI	RGATCY	2 cut(s)	51, 338
BsuRI	GGCC	3 cut(s)	38, 72, 243
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	2 cut(s)	179, 288
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	8 cut(s)	38, 72, 142, 161, 170, 193, 243, 298
CviKI_1	RGCY	8 cut(s)	38, 72, 142, 161, 170, 193, 243, 298
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	74, 259
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	3 cut(s)	53, 330, 340
DpnII	GATC	3 cut(s)	51, 328, 338
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	151
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
FaeI	CATG	1 cut(s)	293
FaiI	YATR	6 cut(s)	14, 185, 291, 308, 354, 384
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	103, 162
Fsp4HI	GCNGC	2 cut(s)	103, 162
GlaI	GCGC	2 cut(s)	178, 287
GluI	GCNGC	2 cut(s)	103, 162
HaeII	RGCGCY	2 cut(s)	180, 289
HaeIII	GGCC	3 cut(s)	38, 72, 243
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	2 cut(s)	179, 288
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	2 cut(s)	177, 286
HinP1I	GCGC	2 cut(s)	177, 286
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	314, 349
HpyCH4V	TGCA	2 cut(s)	215, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 167, 176
HpyF3I	CTNAG	2 cut(s)	74, 259
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	2 cut(s)	177, 286
KasI	GGCGCC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	51, 328, 338
LmnI	GCTCC	2 cut(s)	99, 169
LpnPI	CCDG	2 cut(s)	180, 257
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	202
MalI	GATC	3 cut(s)	53, 330, 340
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	3 cut(s)	51, 328, 338
MboII	GAAGA	3 cut(s)	46, 261, 333
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	2 cut(s)	51, 338
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	280, 366
MluNI	TGGCCA	1 cut(s)	243
Mly113I	GGCGCC	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	59, 241, 246
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	62, 390
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	366
MwoI	GCNNNNNNNGC	3 cut(s)	161, 167, 176
NarI	GGCGCC	1 cut(s)	286
NdeII	GATC	3 cut(s)	51, 328, 338
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	104, 163
PleI	GAGTC	1 cut(s)	251
PluTI	GGCGCC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	51, 338
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	62, 390
SatI	GCNGC	2 cut(s)	103, 162
Sau3AI	GATC	3 cut(s)	51, 328, 338
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	251
SetI	ASST	4 cut(s)	70, 134, 144, 163
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	287
SgeI	CNNG	8 cut(s)	21, 100, 151, 179, 202, 248, 256, 302
Sse9I	AATT	2 cut(s)	280, 366
SsiI	CCGC	1 cut(s)	102
SspDI	GGCGCC	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	314, 349
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	280, 366
TauI	GCSGC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	62, 390
Tru9I	TTAA	2 cut(s)	62, 390
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	46, 341, 349
TspRI	CASTG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.