Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

21939404 .. 21942171

Gene Structure 2768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGAAAGATCAGAGGTTTCAAGCTCGGAAAACGACTCTGTCGGGTCACCCGATGGTTCTTCCTCAGAAAATCCACCACCCCAAAACGGATACCACCGGCTTTGCCCGCCTTCATCTCCGCCATGCAAGTACAAGTCGCTTCGCGCGAAGCTACTTACTTGAGGGAATTGTGGGCTATCTGTGGTTGCTGCATCTGCAGCTCAATCAGCTGCAACTGTAGTACAGGCTGGCACAAAAAGCTTACCTCTATATCCATCAAGGTGCTTTTTGACGAGAGGGTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCTGCTCTAACTCAATATCGGGTGCTTGGTCCTACGATGAATGAATGCTCATGGATTGAATTACAACCACTCACAAGCCGAAAGCATCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

137

Amino Acids

15.61

Weight (kDa)

10.01

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
Acc36I	ACCTGC	1 cut(s)	328
AccII	CGCG	2 cut(s)	145, 147
AciI	CCGC	2 cut(s)	108, 120
AfaI	GTAC	2 cut(s)	132, 223
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	22, 377
AluBI	AGCT	6 cut(s)	25, 152, 201, 210, 241, 311
AluI	AGCT	6 cut(s)	25, 152, 201, 210, 241, 311
ApeKI	GCWGC	3 cut(s)	189, 198, 210
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	176, 197, 210
BccI	CCATC	2 cut(s)	48, 263
BciVI	GTATCC	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	196, 217
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	190, 199, 211
BlsI	GCNGC	3 cut(s)	191, 200, 212
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmsI	GCATC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	176, 197, 210
Bsh1236I	CGCG	2 cut(s)	145, 147
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	108, 120
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	145, 147
BspMAI	CTGCAG	1 cut(s)	200
BspMI	ACCTGC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssMI	GATC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	108, 230
BstDEI	CTNAG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	46
BstFNI	CGCG	2 cut(s)	145, 147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 195, 198, 207, 238
BstPI	GGTNACC	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	196, 217
BstUI	CGCG	2 cut(s)	145, 147
BstV1I	GCAGC	3 cut(s)	176, 197, 210
BsuI	GTATCC	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	108, 230
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	131, 222
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	2 cut(s)	124, 369
CviQI	GTAC	2 cut(s)	131, 222
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
FaeI	CATG	2 cut(s)	127, 372
FaiI	YATR	4 cut(s)	125, 251, 370, 412
FatI	CATG	2 cut(s)	123, 368
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	190, 199, 211
Fsp4HI	GCNGC	3 cut(s)	190, 199, 211
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	190, 199, 211
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	127, 372
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	239, 309
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	14, 29, 68
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	127, 192, 198, 213
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 195, 198, 207, 238
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	127, 372
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	111, 210, 214, 285, 333, 392
Lsp1109I	GCAGC	3 cut(s)	176, 197, 210
LweI	GCATC	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	52
MluCI	AATT	2 cut(s)	167, 377
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	8, 74, 156, 256, 270
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	368
MvnI	CGCG	2 cut(s)	145, 147
MwoI	GCNNNNNNNGC	5 cut(s)	107, 195, 198, 207, 238
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	127, 372
NmuCI	GTSAC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	49, 144
PctI	GAATGC	1 cut(s)	368
PflFI	GACNNNGTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	191, 200, 212
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	132, 223
RsaNI	GTAC	2 cut(s)	131, 222
RseI	CAYNNNNRTG	1 cut(s)	260
SatI	GCNGC	3 cut(s)	190, 199, 211
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	196, 217
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	167, 377
SsiI	CCGC	2 cut(s)	108, 120
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	2 cut(s)	167, 377
TatI	WGTACW	2 cut(s)	130, 221
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	189, 198, 210
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	103, 371, 375
TspGWI	ACGGA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.