Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

41011643 .. 41013341

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAACCATATTGAGATAGTCAGATACAGTACGTCTTTCTTTATAACAATATGTGAAACAACTTCAGTTGCAAAGCTTAAGCATAACTATTTCACTGAAAAAGGTGGGGTCATTAAGAAGTTATCGAACAAAAAGGGGAAGCGTGCTCCTCCATCATTTTGGGAGCTCAGCAGTATGTATGGTGGAGAGTGGACACCAGCAAGCAAATTAAGATATAATATGCAGAACGCTATTTTCTGTTGCACTGTTCAGGTCCATCCTAATTCATGGACTGAAATTTACGCCAGATCTGGACAATGTGGGAATGTGGAATGTGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

107

Amino Acids

12.22

Weight (kDa)

9.04

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	76, 166
AluI	AGCT	2 cut(s)	76, 166
Alw21I	GWGCWC	2 cut(s)	148, 168
ApoI	RAATTY	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	2 cut(s)	148, 168
BccI	CCATC	2 cut(s)	160, 264
BfrI	CTTAAG	1 cut(s)	77
BglII	AGATCT	2 cut(s)	287, 318
BlpI	GCTNAGC	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	167
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	148, 168
Bsp1286I	GDGCHC	2 cut(s)	148, 168
Bsp143I	GATC	2 cut(s)	287, 318
Bsp1720I	GCTNAGC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	180
BspTI	CTTAAG	1 cut(s)	77
BssMI	GATC	2 cut(s)	287, 318
Bst4CI	ACNGT	2 cut(s)	29, 247
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	144, 202
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	290, 321
BstMBI	GATC	2 cut(s)	287, 318
BstX2I	RGATCY	2 cut(s)	287, 318
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	2 cut(s)	287, 318
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	93, 243
Cac8I	GCNNGC	2 cut(s)	144, 202
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	2 cut(s)	76, 166
CviKI_1	RGCY	2 cut(s)	76, 166
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	289, 320
DpnII	GATC	2 cut(s)	287, 318
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	270
FaiI	YATR	9 cut(s)	9, 44, 52, 84, 176, 180, 216, 221, 268
FatI	CATG	1 cut(s)	266
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	23, 323
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	29, 247
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	71, 223, 243
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	287, 318
LmnI	GCTCC	2 cut(s)	151, 163
LpnPI	CCDG	4 cut(s)	210, 236, 276, 298
MaeII	ACGT	1 cut(s)	32
MalI	GATC	2 cut(s)	289, 320
MboI	GATC	2 cut(s)	287, 318
MflI	RGATCY	2 cut(s)	287, 318
MhlI	GDGCHC	2 cut(s)	148, 168
MluCI	AATT	3 cut(s)	206, 262, 276
MnlI	CCTC	1 cut(s)	159
MseI	TTAA	3 cut(s)	78, 114, 209
MspCI	CTTAAG	1 cut(s)	77
NdeII	GATC	2 cut(s)	287, 318
NlaIII	CATG	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	2 cut(s)	287, 318
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	78, 114, 209
Sau3AI	GATC	2 cut(s)	287, 318
Sau96I	GGNCC	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	148, 168
SetI	ASST	5 cut(s)	35, 78, 106, 168, 255
SgeI	CNNG	7 cut(s)	155, 209, 213, 263, 279, 297, 303
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	206, 262, 276
SstI	GAGCTC	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	29, 247
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	206, 262, 276
Tru1I	TTAA	3 cut(s)	78, 114, 209
Tru9I	TTAA	3 cut(s)	78, 114, 209
TscAI	CASTG	2 cut(s)	100, 250
TspDTI	ATGAA	2 cut(s)	17, 255
TspRI	CASTG	2 cut(s)	100, 250
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.