Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Reverse (-)

20719098 .. 20721433

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACCATATTGAGATAGTCAGATACAGTACGTCTTTCCTTATAACAATATGTGAAACAACTTCAGTTGCAAAGCTTAAGCATAACTATTTCACTGAAAAAGGTGGGGTCATTAAGAAGTTATCGAACAAAAAGGGGAAGCGTGCTCCTCCATCATGTAAAGAGATACATCTTTTTTGGAGAGCATTCTTAATATCCCACAATACTGCCTCTACTAATACAACTGAAAAAGAAAAAGATTCAGCTGAAAATTCTAAGTTTGGGAGCTCAGCAGAATCAGAAATAGGACAGTGCCTTGGTTGTATCCAGGTGGACCAGTCTACTGTTGCAATCAGAGAATCTTTTAGGAAGTTTGATGATGTGCTTGAACCTGTTTGTCATCGTTTTTCTTGGTGTTTGGGTTGCACAGTAGCTGGTCATCTGTTTCTACGAGTGCAACAATTTGGATGTTCGCAAAAGACCAAGGTTTGTTTCAATTTCCTTGATACACAAAAGATTGCTATAACCTTCTATACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

8.85

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	368, 475
AjnI	CCWGG	1 cut(s)	306
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	4 cut(s)	76, 245, 267, 413
AluI	AGCT	4 cut(s)	76, 245, 267, 413
Alw21I	GWGCWC	2 cut(s)	148, 269
AlwNI	CAGNNNCTG	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	269
Bbv12I	GWGCWC	2 cut(s)	148, 269
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	314
BlpI	GCTNAGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	295, 462
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	295, 462
BseGI	GGATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	148, 269
BsmI	GAATGC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	148, 269
Bsp1720I	GCTNAGC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	295, 462
BssT1I	CCWWGG	2 cut(s)	295, 462
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	4 cut(s)	29, 291, 325, 409
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	255, 268
BstF5I	GGATG	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	452
BtsIMutI	CAGTG	2 cut(s)	93, 296
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	4 cut(s)	76, 245, 267, 413
CviKI_1	RGCY	4 cut(s)	76, 245, 267, 413
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	255, 268
Ecl136II	GAGCTC	1 cut(s)	267
Eco130I	CCWWGG	2 cut(s)	295, 462
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	295, 462
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	2 cut(s)	295, 462
FaeI	CATG	1 cut(s)	159
FaiI	YATR	7 cut(s)	9, 44, 52, 84, 157, 503, 513
FatI	CATG	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	320
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	3 cut(s)	239, 275, 338
Hpy166II	GTNNAC	2 cut(s)	313, 321
Hpy188I	TCNGA	3 cut(s)	23, 280, 335
Hpy8I	GTNNAC	2 cut(s)	313, 321
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	4 cut(s)	29, 291, 325, 409
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	4 cut(s)	71, 329, 405, 436
HpyF3I	CTNAG	2 cut(s)	255, 268
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	151, 264
LpnPI	CCDG	5 cut(s)	293, 320, 329, 384, 399
MaeII	ACGT	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	148, 269
MluCI	AATT	3 cut(s)	250, 440, 475
MnlI	CCTC	2 cut(s)	159, 220
MseI	TTAA	3 cut(s)	78, 114, 191
MspA1I	CMGCKG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	308
NlaIII	CATG	1 cut(s)	159
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	239, 275, 338
PsiI	TTATAA	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	78, 114, 191
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	148, 269
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	250, 440, 475
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	295, 462
TaaI	ACNGT	4 cut(s)	29, 291, 325, 409
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	250, 440, 475
TfiI	GAWTC	3 cut(s)	239, 275, 338
Tru1I	TTAA	3 cut(s)	78, 114, 191
Tru9I	TTAA	3 cut(s)	78, 114, 191
TscAI	CASTG	2 cut(s)	100, 296
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	100, 296
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.