Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

1720972 .. 1722059

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTAACTGCTGTTTGAGGCGTGATTCTGCGGTTTGGGCCAACGACGACGACGGGTGGGTCAACGTGTGTAAGCTCCACCAGTCGCAGCAGCCGGAAAAGCAGAAGCTTCTCGGTGAGGTTCAATTCAGATCTTCTTCAGGTTCCTCCTCGTCCTCCTGTAGACGAAGACCGAGTAGTAGCGGTGGAGATCATCATGAGGTGAAGATAAAGATGACAAAGAGGGAGCTGGAAGAGTTGGTGGGATCAAGAGGCGGCGCTATGGACGTGTTGACGGTGGAGCAACTATTGGCGAGGGTGATCGACGACGGCGATGATCGGTATGAGGAGCATCAACGGCCGTGGAGGCCTGCCCTCCAAAGTATTCCGGAGGTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

126

Amino Acids

14.19

Weight (kDa)

5.81

Isoelectric Point (pI)

76.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	163
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	3 cut(s)	32, 183, 255
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	123
AflIII	ACRYGT	2 cut(s)	66, 267
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	268
AluBI	AGCT	3 cut(s)	76, 109, 229
AluI	AGCT	3 cut(s)	76, 109, 229
AlwI	GGATC	1 cut(s)	253
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	3 cut(s)	39, 338, 347
ApeKI	GCWGC	2 cut(s)	88, 91
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	128, 214, 310
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	100, 103
BceAI	ACGGC	3 cut(s)	325, 325, 353
BfmI	CTRYAG	1 cut(s)	160
BfoI	RGCGCY	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	3 cut(s)	89, 92, 256
BlsI	GCNGC	3 cut(s)	90, 93, 257
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	139, 341
BseX3I	CGGCCG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	100, 103
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	41, 340, 349
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	95, 368
BsnI	GGCC	3 cut(s)	41, 340, 349
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	131, 190, 245, 300, 316
BspACI	CCGC	3 cut(s)	32, 183, 255
BspANI	GGCC	3 cut(s)	41, 340, 349
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	5 cut(s)	131, 190, 245, 300, 316
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	5 cut(s)	134, 193, 248, 303, 319
BstMBI	GATC	5 cut(s)	131, 190, 245, 300, 316
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	100, 103
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BstZI	CGGCCG	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	41, 340, 349
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	39
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	41, 76, 94, 109, 229, 340, 349
CviKI_1	RGCY	7 cut(s)	41, 76, 94, 109, 229, 340, 349
DpnI	GATC	5 cut(s)	133, 192, 247, 302, 318
DpnII	GATC	5 cut(s)	131, 190, 245, 300, 316
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	338
EagI	CGGCCG	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	123
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	198, 263, 324
FatI	CATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	89, 92, 256
Fsp4HI	GCNGC	3 cut(s)	89, 92, 256
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	89, 92, 256
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	41, 340, 349
HapII	CCGG	2 cut(s)	95, 368
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	2 cut(s)	64, 273
HindII	GTYRAC	2 cut(s)	64, 273
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	95, 368
HphI	GGTGA	3 cut(s)	128, 214, 310
Hpy166II	GTNNAC	3 cut(s)	64, 164, 273
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	3 cut(s)	197, 249, 368
Hpy8I	GTNNAC	3 cut(s)	64, 164, 273
Hpy99I	CGWCG	5 cut(s)	50, 53, 56, 308, 311
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	66, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
HpySE526I	ACGT	2 cut(s)	66, 267
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	131, 190, 245, 300, 316
LmnI	GCTCC	4 cut(s)	81, 226, 280, 328
LpnPI	CCDG	6 cut(s)	95, 108, 126, 172, 215, 363
Lsp1109I	GCAGC	2 cut(s)	100, 103
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	2 cut(s)	66, 267
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	133, 192, 247, 302, 318
MboI	GATC	5 cut(s)	131, 190, 245, 300, 316
MboII	GAAGA	5 cut(s)	126, 129, 180, 217, 245
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	367
MspI	CCGG	2 cut(s)	95, 368
MwoI	GCNNNNNNNGC	4 cut(s)	38, 100, 337, 346
NdeII	GATC	5 cut(s)	131, 190, 245, 300, 316
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	145
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	90, 93, 257
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	131
SatI	GCNGC	3 cut(s)	89, 92, 256
Sau3AI	GATC	5 cut(s)	131, 190, 245, 300, 316
Sau96I	GGNCC	1 cut(s)	39
SetI	ASST	9 cut(s)	69, 78, 111, 123, 145, 204, 231, 270, 375
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	160
SfiI	GGCCNNNNNGGCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	32, 183, 255
StuI	AGGCCT	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	69, 270
TaqI	TCGA	2 cut(s)	303, 375
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	88, 91
XmiI	GTMKAC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.