Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Reverse (-)

73594275 .. 73601837

Gene Structure 7563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCTTCCGCAAGATATCATGAAGAGATACTCTCTCGACTCCCTGCCAAGTTTGTGGGTCGATTCAGGTGCGTATCAAAGTCATGGCACCATCTTACCACCCAACCAGACTTCATCGACTCCCACCTCAAGCGACAGAGACAGAAACTCATTTTCAGTTCTATTAGGTCTTTCTTCTCCTTGGACTATGAAGGTCAACATATGGTACCCTTAGAGCTTGATTTTCCACTCAAGTACCCTCACAACCAAGGGCCAGTTGATATGTTTGGCTCATGTAATGGTTTGGTGCTTCTTGATGATGGGAAGACGGAGAGGCTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTGTGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCAAAAGCATCAGTTGGTTACTATTTGGTTGGAGTGCAAGGATTCCTTAGCTGGCTTGCAGGACTATGAGTTTTGGCACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

171

Amino Acids

19.74

Weight (kDa)

6.74

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 38	1.1e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	2 cut(s)	87, 205
AciI	CCGC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	207, 236
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	3 cut(s)	217, 347, 482
AluI	AGCT	3 cut(s)	217, 347, 482
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	251, 383
AvaII	GGWCC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BanI	GGYRCC	2 cut(s)	87, 205
BbsI	GAAGAC	1 cut(s)	311
BccI	CCATC	2 cut(s)	99, 293
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	251, 383
BmiI	GGNNCC	2 cut(s)	89, 207
BmsI	GCATC	2 cut(s)	389, 448
BpiI	GAAGAC	1 cut(s)	311
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	2 cut(s)	113, 215
BsaJI	CCNNGG	2 cut(s)	180, 247
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	180, 247
BseGI	GGATG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	253
BshNI	GGYRCC	2 cut(s)	87, 205
BsiSI	CCGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	89, 207
BspT107I	GGYRCC	2 cut(s)	87, 205
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	180, 247
BssT1I	CCWWGG	2 cut(s)	180, 247
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	484, 488
BstDEI	CTNAG	2 cut(s)	211, 478
BstF5I	GGATG	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	484, 488
CciI	TCATGA	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	251, 383
Csp6I	GTAC	2 cut(s)	206, 235
CviAII	CATG	4 cut(s)	20, 84, 273, 405
CviQI	GTAC	2 cut(s)	206, 235
DdeI	CTNAG	2 cut(s)	211, 478
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	180, 247
Eco32I	GATATC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	180, 247
ErhI	CCWWGG	2 cut(s)	180, 247
FaeI	CATG	4 cut(s)	23, 87, 276, 408
FaiI	YATR	9 cut(s)	21, 85, 189, 201, 203, 263, 274, 406, 498
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FatI	CATG	4 cut(s)	19, 83, 272, 404
FauNDI	CATATG	1 cut(s)	201
FokI	GGATG	1 cut(s)	411
FspBI	CTAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	4 cut(s)	23, 87, 276, 408
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	4 cut(s)	39, 63, 119, 473
HpaII	CCGG	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188III	TCNNGA	4 cut(s)	20, 36, 293, 336
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	15, 185
HpyCH4V	TGCA	2 cut(s)	468, 490
HpyF3I	CTNAG	2 cut(s)	211, 478
Hsp92II	CATG	4 cut(s)	23, 87, 276, 408
KpnI	GGTACC	1 cut(s)	209
LpnPI	CCDG	9 cut(s)	52, 57, 120, 267, 321, 369, 399, 468, 476
LweI	GCATC	2 cut(s)	389, 448
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	448
MboII	GAAGA	3 cut(s)	35, 166, 316
MluCI	AATT	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	33, 113
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	3 cut(s)	137, 249, 306
MspI	CCGG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	201
NlaIII	CATG	4 cut(s)	23, 87, 276, 408
NlaIV	GGNNCC	2 cut(s)	89, 207
PagI	TCATGA	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	63, 473
PleI	GAGTC	2 cut(s)	33, 113
PpsI	GAGTC	2 cut(s)	33, 113
PspN4I	GGNNCC	2 cut(s)	89, 207
PspPI	GGNCC	2 cut(s)	251, 383
RsaI	GTAC	2 cut(s)	207, 236
RsaNI	GTAC	2 cut(s)	206, 235
Sau96I	GGNCC	2 cut(s)	251, 383
SchI	GAGTC	2 cut(s)	33, 113
SetI	ASST	7 cut(s)	71, 129, 170, 196, 219, 349, 484
SfaNI	GCATC	2 cut(s)	389, 448
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	128, 230
SmoI	CTYRAG	2 cut(s)	128, 230
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	429
StyI	CCWWGG	2 cut(s)	180, 247
TaqI	TCGA	3 cut(s)	37, 61, 117
TasI	AATT	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	63, 473
TspDTI	ATGAA	3 cut(s)	36, 103, 204
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	383
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.