Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

41011243 .. 41011628

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG188000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGAGGCTGATCTAAGAATCATTTGGACAATATTGAGCATGGTAATTCTGACATATATGTTGAAGCAAATTCATTTCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGGAGTCAATTGACTACTTGGAAAATGATGTTGACACCTTTCACATTGAATGATTGGGATGTTAGCTGTGGTGAATTCTATGGACTACCTCTATTTGAGGACTTGAATACTAGAAAAGAAACTACATCTGGATCTACCAAGTCAACCAGAAGAAAGACTGAGACTTCTACAACAGCCCCTAGAGAAAGATCTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

103

Amino Acids

12.03

Weight (kDa)

9.51

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	72, 185
AgsI	TTSAA	5 cut(s)	67, 95, 104, 160, 217
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	72, 185
AsuHPI	GGTGA	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	222, 291
BglII	AGATCT	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	304
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	13, 242, 299
BspCNI	CTCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	250
BssMI	GATC	3 cut(s)	13, 242, 299
BstDEI	CTNAG	2 cut(s)	17, 270
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	3 cut(s)	16, 245, 302
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	13, 242, 299
BstX2I	RGATCY	2 cut(s)	242, 299
BstYI	RGATCY	2 cut(s)	242, 299
BtsCI	GGATG	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	11
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	11, 177, 287
CviKI_1	RGCY	3 cut(s)	11, 177, 287
DdeI	CTNAG	2 cut(s)	17, 270
DpnI	GATC	3 cut(s)	15, 244, 301
DpnII	GATC	3 cut(s)	13, 242, 299
EcoRI	GAATTC	1 cut(s)	185
FaeI	CATG	1 cut(s)	46
FaiI	YATR	5 cut(s)	44, 58, 60, 62, 192
FatI	CATG	1 cut(s)	42
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	2 cut(s)	222, 291
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	2 cut(s)	144, 255
HindII	GTYRAC	2 cut(s)	144, 255
HinfI	GANTC	2 cut(s)	21, 115
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	144, 255
Hpy188I	TCNGA	2 cut(s)	7, 54
Hpy188III	TCNNGA	2 cut(s)	82, 240
Hpy8I	GTNNAC	2 cut(s)	144, 255
HpyAV	CCTTC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	17, 270
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	13, 242, 299
LpnPI	CCDG	3 cut(s)	67, 225, 271
MaeI	CTAG	2 cut(s)	222, 291
MalI	GATC	3 cut(s)	15, 244, 301
MboI	GATC	3 cut(s)	13, 242, 299
MboII	GAAGA	1 cut(s)	273
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	2 cut(s)	242, 299
MluCI	AATT	4 cut(s)	48, 72, 119, 185
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	2 cut(s)	202, 210
MunI	CAATTG	1 cut(s)	119
NdeII	GATC	3 cut(s)	13, 242, 299
NlaIII	CATG	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	242, 299
Sau3AI	GATC	3 cut(s)	13, 242, 299
SchI	GAGTC	1 cut(s)	124
SetI	ASST	3 cut(s)	151, 179, 202
Sse9I	AATT	4 cut(s)	48, 72, 119, 185
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	222, 291
TasI	AATT	4 cut(s)	48, 72, 119, 185
TfiI	GAWTC	1 cut(s)	21
TspDTI	ATGAA	1 cut(s)	65
XapI	RAATTY	2 cut(s)	72, 185
XspI	CTAG	2 cut(s)	222, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.