Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8039672.1

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 552

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8039672.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

tcagtcaggattagaagcttcccaaccggctctaactcaatatcgggtgcttggtcctacgataaatggatgctcatggattgaattacaaccactcactagccgaaagcatcagctccgtgttcattgtgctgaagctttaggcacgccaattgtgggtgactataagtatgggtggtttgttcaccggagatggaaacaaatgcctcaagtcgatattgagccggcaactgggctacaatacaagttgcggaggccagcaggtctggatgtacagaagggaagtgttctatcaaaagtccctcttttgcatctacactgtagagagctcgtactccccaatattgctaagttccttgttttattggatcagaagtcagacaactggcaccctgtagacagtttgaagccagatatccttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

9.44

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	274, 334
AfiI	CCNNNNNNNGG	2 cut(s)	156, 231
AgsI	TTSAA	2 cut(s)	84, 407
AluBI	AGCT	4 cut(s)	18, 116, 138, 329
AluI	AGCT	4 cut(s)	18, 116, 138, 329
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	171, 177
AvaII	GGWCC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	100
BfmI	CTRYAG	2 cut(s)	320, 394
BfuAI	ACCTGC	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	3 cut(s)	60, 119, 320
BmuI	ACTGGG	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 231
Bse118I	RCCGGY	2 cut(s)	26, 224
Bse1I	ACTGG	2 cut(s)	236, 390
BseGI	GGATG	2 cut(s)	75, 275
BseLI	CCNNNNNNNGG	2 cut(s)	156, 231
BseNI	ACTGG	2 cut(s)	236, 390
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	27, 188, 225
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	156, 231
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	368
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	388
BsrFI	RCCGGY	2 cut(s)	26, 224
BsrGI	TGTACA	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	236, 390
BssAI	RCCGGY	2 cut(s)	26, 224
BssMI	GATC	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	321, 402
BstAUI	TGTACA	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	147, 226, 259
BstDEI	CTNAG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	75, 275
BstKTI	GATC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	368
BstSFI	CTRYAG	2 cut(s)	320, 394
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	75, 275
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	147, 226, 259
Cfr10I	RCCGGY	2 cut(s)	26, 224
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	273, 333
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	2 cut(s)	273, 333
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 166, 172
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	397
FokI	GGATG	2 cut(s)	82, 282
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	3 cut(s)	27, 188, 225
Hin1II	CATG	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	16, 136
HpaII	CCGG	3 cut(s)	27, 188, 225
HphI	GGTGA	2 cut(s)	171, 177
Hpy166II	GTNNAC	2 cut(s)	185, 398
Hpy188I	TCNGA	2 cut(s)	373, 380
Hpy188III	TCNNGA	2 cut(s)	7, 267
Hpy8I	GTNNAC	2 cut(s)	185, 398
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	321, 402
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	79
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	40, 201, 217, 238, 247, 252, 271, 371, 406
LweI	GCATC	3 cut(s)	60, 119, 320
MaeI	CTAG	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MfeI	CAATTG	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	2 cut(s)	84, 151
MnlI	CCTC	3 cut(s)	217, 247, 313
MroNI	GCCGGC	1 cut(s)	224
MspI	CCGG	3 cut(s)	27, 188, 225
MunI	CAATTG	1 cut(s)	151
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	1 cut(s)	368
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	2 cut(s)	274, 334
RsaNI	GTAC	2 cut(s)	273, 333
SacI	GAGCTC	1 cut(s)	331
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	5 cut(s)	20, 118, 140, 266, 331
SfaNI	GCATC	3 cut(s)	60, 119, 320
SfcI	CTRYAG	2 cut(s)	320, 394
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	84, 151
SsiI	CCGC	1 cut(s)	251
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	100
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	321, 402
TaqI	TCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	84, 151
TatI	WGTACW	1 cut(s)	272
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	114
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.