Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

4394297 .. 4395650

Gene Structure 1354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAATTCACTAAGCTCGTTTTCCTAGGCATGTGTTGCATTGCCTTAATCTCAATTCATATTTCTCTGGCCAATGCTGATCCATTGGCTGATGAATTCGTCGAAGCACACAACAAATATCGTGCAGTGGAAAATGTTCCTCCGCTTTCATGGGACGAAACAGTCGCAGATTATGCTAGAAATTATGCCAATTCAAAAGCTGAGACTTGTGAAATGGTGCATTCGCATGGACAATATGGTGAATGCTTAGCCATGGGTAATTACGACGTTTCACCTTCAAAGGCGGTGGAGTTGTGGGCGGATGAGAAACAATACTATGACCATGCCTCCAATACATGTGCCGAAGGCCAGGTGTGCGGCCACTACACTCAGGTGGTCTGGGCAAAATCAACCCACATTGGGTGTGCCAAGATTCTAAGTACCCAAACACCACCACCACCATTTCCACCACCACCTCCGAACCATGATCTGGGTCCACCGCAGCCACCTTGGTCGTCTAATACGAGCCGTCCATTCCCCTCCATGAAGAGGTCGGGTGGGTTGGTGTTGCATCTGCTTGTCCTAAATCTCCGCCAAGGTCTTATTTGCATGCCTGAGATTGTAGAAATGGACATTCATGATCCTGTCATAGGACCTCTCTATCGGGACCCACCTCACCTGCTAGAAAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

224

Amino Acids

24.82

Weight (kDa)

5.35

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	34 - 138	1.8e-18	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	666
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	666
AccB7I	CCANNNNNTGG	1 cut(s)	469
AciI	CCGC	6 cut(s)	143, 284, 299, 357, 479, 571
AclWI	GGATC	2 cut(s)	74, 614
AcoI	YGGCCR	2 cut(s)	69, 358
AcsI	RAATTY	2 cut(s)	5, 95
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	4 cut(s)	399, 469, 528, 629
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	195, 279
AjnI	CCWGG	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	16, 200
AluI	AGCT	2 cut(s)	16, 200
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	74, 614
AoxI	GGCC	3 cut(s)	69, 346, 358
ApeKI	GCWGC	1 cut(s)	481
ApoI	RAATTY	2 cut(s)	5, 95
Asp700I	GAANNNNTTC	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	473, 632, 646
AsuHPI	GGTGA	3 cut(s)	251, 264, 647
AvaII	GGWCC	3 cut(s)	473, 632, 646
AvrII	CCTAGG	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	26, 177, 662
BfuAI	ACCTGC	1 cut(s)	666
BisI	GCNGC	2 cut(s)	358, 482
BlnI	CCTAGG	1 cut(s)	25
BlpI	GCTNAGC	1 cut(s)	247
BlsI	GCNGC	2 cut(s)	359, 483
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	3 cut(s)	473, 632, 646
BmgT120I	GGNCC	3 cut(s)	473, 632, 646
BmiI	GGNNCC	3 cut(s)	474, 647, 648
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	247
BsaJI	CCNNGG	4 cut(s)	25, 252, 488, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	4 cut(s)	399, 469, 528, 629
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	4 cut(s)	25, 252, 488, 574
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	4 cut(s)	399, 469, 528, 629
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	192, 383, 585
BseXI	GCAGC	1 cut(s)	493
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	71, 348, 360
BslFI	GGGAC	2 cut(s)	167, 659
BslI	CCNNNNNNNGG	4 cut(s)	399, 469, 528, 629
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	167, 659
BsmI	GAATGC	2 cut(s)	220, 248
BsnI	GGCC	3 cut(s)	71, 348, 360
Bsp143I	GATC	3 cut(s)	79, 466, 619
Bsp1720I	GCTNAGC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	6 cut(s)	143, 284, 299, 357, 479, 571
BspANI	GGCC	3 cut(s)	71, 348, 360
BspCNI	CTCAG	3 cut(s)	193, 382, 586
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	3 cut(s)	474, 647, 648
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	2 cut(s)	74, 614
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	4 cut(s)	25, 252, 488, 574
BssMI	GATC	3 cut(s)	79, 466, 619
BssT1I	CCWWGG	4 cut(s)	25, 252, 488, 574
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	521
BstAPI	GCANNNNNTGC	2 cut(s)	36, 173
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	6 cut(s)	12, 201, 247, 369, 416, 594
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	82, 469, 622
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	79, 466, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 173, 354
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	3 cut(s)	34, 339, 592
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	71, 348, 360
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	1 cut(s)	590
CciI	TCATGA	1 cut(s)	616
Cfr13I	GGNCC	3 cut(s)	473, 632, 646
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	6 cut(s)	12, 201, 247, 369, 416, 594
DpnI	GATC	3 cut(s)	81, 468, 621
DpnII	GATC	3 cut(s)	79, 466, 619
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	69, 358
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EciI	GGCGGA	2 cut(s)	314, 560
Eco130I	CCWWGG	4 cut(s)	25, 252, 488, 574
Eco47I	GGWCC	3 cut(s)	473, 632, 646
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	632, 646
EcoRI	GAATTC	2 cut(s)	5, 95
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	4 cut(s)	25, 252, 488, 574
ErhI	CCWWGG	4 cut(s)	25, 252, 488, 574
FaqI	GGGAC	2 cut(s)	167, 659
Fnu4HI	GCNGC	2 cut(s)	358, 482
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	358, 482
FspBI	CTAG	3 cut(s)	26, 177, 662
GluI	GCNGC	2 cut(s)	358, 482
HaeIII	GGCC	3 cut(s)	71, 348, 360
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	3 cut(s)	251, 264, 647
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	2 cut(s)	617, 644
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	2 cut(s)	104, 269
HpyAV	CCTTC	2 cut(s)	285, 338
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	39, 125, 220, 550, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 173, 354
HpyF3I	CTNAG	6 cut(s)	12, 201, 247, 369, 416, 594
HpySE526I	ACGT	1 cut(s)	267
KflI	GGGWCCC	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	79, 466, 619
LpnPI	CCDG	9 cut(s)	53, 335, 356, 362, 364, 455, 606, 636, 671
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	3 cut(s)	26, 177, 662
MaeII	ACGT	1 cut(s)	267
MalI	GATC	3 cut(s)	81, 468, 621
MboI	GATC	3 cut(s)	79, 466, 619
MboII	GAAGA	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	6 cut(s)	5, 54, 95, 181, 190, 259
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	7 cut(s)	150, 337, 465, 522, 529, 645, 663
Mox20I	TGGCCA	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	2 cut(s)	225, 371
Msp20I	TGGCCA	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	2 cut(s)	220, 248
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	36, 173, 354
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	79, 466, 619
NlaIV	GGNNCC	3 cut(s)	474, 647, 648
NspI	RCATGY	3 cut(s)	34, 339, 592
OliI	CACNNNNGTG	1 cut(s)	371
PaeI	GCATGC	1 cut(s)	592
PagI	TCATGA	1 cut(s)	616
PaqCI	CACCTGC	1 cut(s)	666
PciI	ACATGT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PctI	GAATGC	2 cut(s)	220, 248
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	359, 483
PpuMI	RGGWCCY	2 cut(s)	632, 646
PscI	ACATGT	1 cut(s)	335
Psp5II	RGGWCCY	2 cut(s)	632, 646
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	474, 647, 648
PspPI	GGNCC	3 cut(s)	473, 632, 646
PspPPI	RGGWCCY	2 cut(s)	632, 646
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	225, 371
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	358, 482
Sau3AI	GATC	3 cut(s)	79, 466, 619
Sau96I	GGNCC	3 cut(s)	473, 632, 646
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	3 cut(s)	473, 632, 646
SmiMI	CAYNNNNRTG	2 cut(s)	225, 371
SphI	GCATGC	1 cut(s)	592
Sse9I	AATT	6 cut(s)	5, 54, 95, 181, 190, 259
SsiI	CCGC	6 cut(s)	143, 284, 299, 357, 479, 571
SspMI	CTAG	3 cut(s)	26, 177, 662
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	4 cut(s)	25, 252, 488, 574
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	102
TasI	AATT	6 cut(s)	5, 54, 95, 181, 190, 259
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	481
TspDTI	ATGAA	5 cut(s)	47, 108, 138, 539, 605
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	3 cut(s)	473, 632, 646
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	5, 95
XceI	RCATGY	3 cut(s)	34, 339, 592
XmaJI	CCTAGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	3 cut(s)	26, 177, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.