Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Reverse (-)

78447655 .. 78453781

Gene Structure 6127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGACAGTGCCTTGGTTGTTTCTACGAGGACCATTCTATTGATGATGTGCTTAAACCAGATTGTCATTGTTTGCCTTGGTGTTTGGGTAGCGCAGCAGCTGACAGAGAGGCTCATCAATCAGGATTAGAAGCTTCCCAGCCGGCTCTAACTCAATATCGGGTGCTTGGTCCTATGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGTTGGTTACTATTTGGTTGGAGCGCAAGGATTCCCTAGCTGTTATTCAAGAATCTGATGTGGCCTGTTTGGAGAAGTTAGCACTCAGCACTAGATCTTCTACTGAAGCAGTCATGTGGCTAAAGACCCAAGAAGCGCAGTGTAGGGAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

5.28

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	200, 278
AluBI	AGCT	3 cut(s)	101, 134, 269
AluI	AGCT	3 cut(s)	101, 134, 269
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	95, 98
AspLEI	GCGC	3 cut(s)	95, 255, 367
AspS9I	GGNCC	2 cut(s)	31, 170
AvaII	GGWCC	2 cut(s)	31, 170
BbvI	GCAGC	2 cut(s)	107, 110
BfaI	CTAG	3 cut(s)	216, 266, 321
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme18I	GGWCC	2 cut(s)	31, 170
BmgT120I	GGNCC	2 cut(s)	31, 170
BmsI	GCATC	2 cut(s)	176, 235
BsaJI	CCNNGG	2 cut(s)	13, 77
BsaXI	ACNNNNNCTCC	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	13, 77
BseGI	GGATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	107, 110
BseYI	CCCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	13, 77
BssMI	GATC	1 cut(s)	323
BssT1I	CCWWGG	2 cut(s)	13, 77
Bst4CI	ACNGT	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	3 cut(s)	95, 255, 367
BstKTI	GATC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	107, 110
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	2 cut(s)	14, 374
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	3 cut(s)	95, 255, 367
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	31, 170
CviAII	CATG	2 cut(s)	192, 343
CviJI	RGCY	9 cut(s)	101, 113, 134, 142, 146, 219, 269, 293, 349
CviKI_1	RGCY	9 cut(s)	101, 113, 134, 142, 146, 219, 269, 293, 349
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
Eco130I	CCWWGG	2 cut(s)	13, 77
Eco47I	GGWCC	2 cut(s)	31, 170
Eco57I	CTGAAG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	13, 77
ErhI	CCWWGG	2 cut(s)	13, 77
FaeI	CATG	2 cut(s)	195, 346
FaiI	YATR	3 cut(s)	176, 193, 344
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	191, 342
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	96, 99
FspBI	CTAG	3 cut(s)	216, 266, 321
GlaI	GCGC	3 cut(s)	94, 254, 366
GluI	GCNGC	2 cut(s)	96, 99
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	3 cut(s)	95, 255, 367
Hin1II	CATG	2 cut(s)	195, 346
Hin6I	GCGC	3 cut(s)	93, 253, 365
HinP1I	GCGC	3 cut(s)	93, 253, 365
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	2 cut(s)	260, 281
HpaII	CCGG	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	2 cut(s)	123, 278
HpyCH4III	ACNGT	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	195, 346
HspAI	GCGC	3 cut(s)	93, 253, 365
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	72, 108, 152, 156, 307
Lsp1109I	GCAGC	2 cut(s)	107, 110
LweI	GCATC	2 cut(s)	176, 235
MaeI	CTAG	3 cut(s)	216, 266, 321
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	1 cut(s)	318
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	22, 103
MroNI	GCCGGC	1 cut(s)	142
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	143
NaeI	GCCGGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	323
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	195, 346
PdiI	GCCGGC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	260, 281
PkrI	GCNGC	2 cut(s)	97, 100
PspFI	CCCAGC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	31, 170
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	2 cut(s)	31, 170
SetI	ASST	3 cut(s)	103, 136, 271
SfaNI	GCATC	2 cut(s)	176, 235
SinI	GGWCC	2 cut(s)	31, 170
Sse9I	AATT	1 cut(s)	200
SspMI	CTAG	3 cut(s)	216, 266, 321
StyI	CCWWGG	2 cut(s)	13, 77
TaaI	ACNGT	1 cut(s)	9
TasI	AATT	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	260, 281
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	14, 374
TseI	GCWGC	2 cut(s)	95, 98
TspRI	CASTG	2 cut(s)	14, 374
VpaK11BI	GGWCC	2 cut(s)	31, 170
XspI	CTAG	3 cut(s)	216, 266, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.