Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003958

Physical Location & Seq

Genomic Coordinates Forward (+)

47685917 .. 47688463

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTCAAGTGCTTCAAAGGGAAGGGAGTCAATTGACTACTTGGAAAATGATGTTGACACCTTTCACATTGAATGATTGGGATGTTAGCTGTGGTGAATTCTATGGACTACCTCTATTTGAGGACTTGAATACTAGAAAAGAAACTACATCTGGATCTACCAAGTCAACCCGAAGAAAGACTGAGACTTCTACAACAGCCCCTAGAGAAAGTACAGGTGGTGTCATTAAGAAGTTATCGAACAAAAAGGGGAAGCGTGCTCCTCCATCATGTAAAGCGATACATCTTTTTTGGAGAACATTCTTAATATCCCACAATACTGCCTCTACTAATACAACTGAAAAAGAAAAAGATTCAGCTGAAAATTCTAAGTTTGGCAGCTCAGCAGAATCAGAAATAGGACAGTGCCTTGGTTGTATCCAGGTGGACCAGTCTACTGTTGCAATCAGAGAATCTTTTAGGAAGTTTGATGATGTGCCTGAACCTGTTTGTCATCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0009506 GO:0009507 GO:0009536 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

8.84

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003958)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046700.v1.1
pyrus_communis	pycom111g03710
rosa_chinensis	RchiOBHm_Chr6g0247011 RchiOBHm_Chr6g0267921 RchiOBHm_Chr6g0283081 RchiOBHm_Chr7g0224431
rosa_laevigata	RLG00000033406
rosa_multiflora	Rmu_co8039672.1_g000001
rosa_roxburghii	Rroxscaffold_1G00052870 Rroxscaffold_1G00056630 Rroxscaffold_7G00200330
rosa_rugosa	Rorug01G0308200 Rorug05G0026500 Rorug06G0035300
rosa_samantha	Rh1CG188000 Rh1CG188100 Rh3BG368100 Rh3CG241300 Rh6AG192600 Rh6BG158200 Rh6BG158500 Rh6CG157800 Rh6CG158000 Rh6CG195900 Rh6DG143400 Rh6DG143500 Rh6DG143800 Rh6DG143900 Rh6DG144200 Rh6DG164200 Rh6DG220100
rosa_wichuraiana	Rw3G019330 Rw6G013640 Rw6G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	434
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	98, 364
AfaI	GTAC	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	8, 17, 73, 130
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	3 cut(s)	90, 359, 381
AluI	AGCT	3 cut(s)	90, 359, 381
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	98, 364
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	135, 204
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	174, 396
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	155
Bsp1720I	GCTNAGC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	175, 395
BspPI	GGATC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	409
BssMI	GATC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	405, 439
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	183, 369, 382
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	1 cut(s)	270
CviJI	RGCY	4 cut(s)	90, 200, 359, 381
CviKI_1	RGCY	4 cut(s)	90, 200, 359, 381
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	3 cut(s)	183, 369, 382
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	273
FaiI	YATR	2 cut(s)	105, 271
FatI	CATG	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	1 cut(s)	379
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	2 cut(s)	135, 204
GluI	GCNGC	1 cut(s)	379
Hin1II	CATG	1 cut(s)	273
HincII	GTYRAC	2 cut(s)	57, 168
HindII	GTYRAC	2 cut(s)	57, 168
HinfI	GANTC	4 cut(s)	28, 353, 389, 452
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	4 cut(s)	57, 168, 427, 435
Hpy188I	TCNGA	2 cut(s)	394, 449
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	4 cut(s)	57, 168, 427, 435
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	405, 439
HpyCH4V	TGCA	1 cut(s)	443
HpyF3I	CTNAG	3 cut(s)	183, 369, 382
Hsp92II	CATG	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	138, 201, 407, 434, 443, 492
Lsp1109I	GCAGC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	135, 204
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	186
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	32, 98, 364
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	115, 123, 273, 334
MseI	TTAA	2 cut(s)	228, 305
MspA1I	CMGCKG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	422
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	353, 389, 452
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	228, 305
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	64, 92, 115, 220, 361, 383, 426, 487
SinI	GGWCC	1 cut(s)	427
Sse9I	AATT	3 cut(s)	32, 98, 364
SspMI	CTAG	2 cut(s)	135, 204
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	405, 439
TaqI	TCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	32, 98, 364
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	353, 389, 452
Tru1I	TTAA	2 cut(s)	228, 305
Tru9I	TTAA	2 cut(s)	228, 305
TscAI	CASTG	1 cut(s)	410
TseI	GCWGC	1 cut(s)	378
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	2 cut(s)	98, 364
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	2 cut(s)	135, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.