Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Reverse (-)

19171670 .. 19174620

Gene Structure 2951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1203700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGTTTAATGGGTTTGCTGAGCTTTCATTGACCATTGCAAGACTTCCTGTGTTTTACAAGCATAGAGATCTTCTTTTCCACCCTGCTTGGACTTTCACTCTTCCATCTGTCCTGCTTGGGATTCCTATATCCATCATCGAATCTACTGTTTTTCAAGCAATTATTATTGGTCAAATTCCAGATTGGTGGACGTGGGCATACTGGATTGCACCTTTGTCATATGGCTTCAATGCTATCTCAGTAAATGAAATGTATGCTCCGAGGTGGATGAACAAACGGGCTTTAGATAATGTTACCAGCGTGGGAGAAATGAAAGTCAGACAAATGAGCAGTCGATCTAGCTCTAGTGGACTGGATAGAAATGCTGATTCGTCTCTCGAAGTCTCCAGTGGCGTTGCCCCCAAGAGAGGAATGGTTCTACCTTTCACTCCTCTTGCAATGTCCTTCGACAGTGTTAATTATTTTCTGGACATGCCCTCTGAAATGAAGGAGGAAGGAGTAACAGAGGACAGGCTGCAACTACTTCGTGAAGTAACTGGTGCATTTAGGCCTGGGATCTTGACTGCTCTAATGGGCGTCAGTGGGGCTGGGAAAACAACTTTGATGGATGTCTTAGCAGGAAGAAAGACTGGAGGTTACATTGAAGGTGACATTAGAATTTCCGGGTACCCTAAGAAGCAAGAAACCTTAGCAAGAATTTCTGGTTACTGTGAACAAGCTGATATCCACTCACCCCAAGTTACTATAAAAGAATCGTTGATTTACTCAGCTTTCCTTAGACTCCCTAAAGAAGTCAACAACAAGGAAAAGATGATTTTTGTAGGTCAAGTGATGCAACTGGTTGAGCTAGACAATCTCAAAGATGCTTTAGTAGCGCTTCCCGGAGTTTCAGGGTTGTTAACAGAAAAAAGAAAGAGGTTAACGATTGCTGTTGAGCTTGATGCCAATCCCTCAATCATTTTCATGGATGAACCAACATCAGGTCTTGATGGAAGGGCAGCTGCCATTGTTATGAGGACTGTTAGAAATACAGTGGACACTGGGAGAACAGTTGTTTGCACAATTCATCAGCCTAGCATAGATATATTTGAGGCATTTGATGAGCTGCTACTGATGAAGAGAGAAGGACAAGTTATCTACTTAGGAGGACAAGTTATCTACTTAGGACCACTGGGCCGCAATTATCACAAGATTGTTGAATATTTTGTGGCGGTTCCTGGTGTGCCAAAAATCAAAGAGAAGTATAATCCAGCTACATGGATGCTTGAGGCGAGCTCAACGTCAATTGAGGTCCGGCTTGGAATGGACTTTGCTCAATACTACTGTTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

445

Amino Acids

49.39

Weight (kDa)

6.28

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 55	2.2e-06	ABC-2 type transporter
ABC_tran	PF00005	176 - 327	7.6e-16	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	666
AciI	CCGC	2 cut(s)	1177, 1211
AclWI	GGATC	1 cut(s)	563
AcsI	RAATTY	3 cut(s)	174, 657, 696
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	668
AfeI	AGCGCT	1 cut(s)	876
AfiI	CCNNNNNNNGG	2 cut(s)	407, 980
AgsI	TTSAA	4 cut(s)	155, 229, 644, 1199
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	550, 1216
Alw21I	GWGCWC	1 cut(s)	1277
Alw26I	GTCTC	2 cut(s)	378, 388
AlwI	GGATC	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	876
AoxI	GGCC	2 cut(s)	548, 1174
ApeKI	GCWGC	4 cut(s)	514, 998, 1001, 1105
ApoI	RAATTY	3 cut(s)	174, 657, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	3 cut(s)	1166, 1174, 1291
AsuC2I	CCSGG	2 cut(s)	664, 882
AsuHPI	GGTGA	2 cut(s)	659, 723
AvaII	GGWCC	2 cut(s)	1166, 1291
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	1277
Bbv12I	GWGCWC	1 cut(s)	1277
BbvI	GCAGC	4 cut(s)	501, 988, 1010, 1092
BccI	CCATC	4 cut(s)	112, 140, 598, 983
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	2 cut(s)	552, 1218
BcnI	CCSGG	2 cut(s)	664, 882
BcoDI	GTCTC	2 cut(s)	378, 388
BfaI	CTAG	4 cut(s)	339, 345, 848, 1074
BfoI	RGCGCY	1 cut(s)	878
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	5 cut(s)	515, 999, 1002, 1106, 1177
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	5 cut(s)	516, 1000, 1003, 1107, 1178
Bme1390I	CCNGG	4 cut(s)	552, 664, 882, 1218
Bme18I	GGWCC	2 cut(s)	1166, 1291
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	1166, 1174, 1291
BmiI	GGNNCC	2 cut(s)	668, 1215
BmrFI	CCNGG	4 cut(s)	552, 664, 882, 1218
BmrI	ACTGGG	2 cut(s)	1050, 1181
BmsI	GCATC	4 cut(s)	822, 853, 931, 1251
BmuI	ACTGGG	2 cut(s)	1050, 1181
BplI	GAGNNNNNCTC	2 cut(s)	1259, 1291
BpmI	CTGGAG	2 cut(s)	370, 651
Bpu10I	CCTNAGC	1 cut(s)	688
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	1286
BpuMI	CCSGG	2 cut(s)	664, 882
BsaBI	GATNNNNATC	1 cut(s)	945
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	260, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	1137, 1167
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 980
Bse1I	ACTGG	8 cut(s)	206, 357, 387, 541, 634, 843, 1045, 1176
Bse3DI	GCAATG	2 cut(s)	33, 444
Bse8I	GATNNNNATC	1 cut(s)	945
BseBI	CCWGG	2 cut(s)	552, 1218
BseDI	CCNNGG	2 cut(s)	260, 551
BseGI	GGATG	4 cut(s)	273, 613, 973, 1266
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	407, 980
BseMI	GCAATG	2 cut(s)	33, 444
BseMII	CTCAG	3 cut(s)	9, 252, 780
BseNI	ACTGG	8 cut(s)	206, 357, 387, 541, 634, 843, 1045, 1176
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	501, 988, 1010, 1092
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	2 cut(s)	550, 1176
BshNI	GGYRCC	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	1277
BsiSI	CCGG	3 cut(s)	663, 882, 1294
BslI	CCNNNNNNNGG	2 cut(s)	407, 980
BsmAI	GTCTC	2 cut(s)	378, 388
BsmBI	CGTCTC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	550, 1176
Bsp1286I	GDGCHC	1 cut(s)	1277
Bsp143I	GATC	3 cut(s)	67, 335, 555
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	1177, 1211
BspANI	GGCC	2 cut(s)	550, 1176
BspCNI	CTCAG	3 cut(s)	10, 251, 779
BspLI	GGNNCC	2 cut(s)	668, 1215
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	666
BsrDI	GCAATG	2 cut(s)	33, 444
BsrI	ACTGG	8 cut(s)	206, 357, 387, 541, 634, 843, 1045, 1176
BssECI	CCNNGG	2 cut(s)	260, 551
BssMI	GATC	3 cut(s)	67, 335, 555
BssNI	GRCGYC	1 cut(s)	576
Bst2UI	CCWGG	2 cut(s)	552, 1218
Bst4CI	ACNGT	7 cut(s)	148, 452, 710, 1021, 1033, 1051, 1325
Bst6I	CTCTTC	2 cut(s)	105, 1112
BstACI	GRCGYC	1 cut(s)	576
BstC8I	GCNNGC	1 cut(s)	1273
BstDEI	CTNAG	9 cut(s)	18, 238, 613, 672, 688, 766, 776, 1141, 1162
BstF5I	GGATG	4 cut(s)	273, 613, 973, 1266
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstKTI	GATC	3 cut(s)	70, 338, 558
BstMAI	GTCTC	2 cut(s)	378, 388
BstMBI	GATC	3 cut(s)	67, 335, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	872
BstNI	CCWGG	2 cut(s)	552, 1218
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	4 cut(s)	550, 662, 880, 1216
BstV1I	GCAGC	4 cut(s)	501, 988, 1010, 1092
BstX2I	RGATCY	2 cut(s)	67, 555
BstXI	CCANNNNNNTGG	2 cut(s)	186, 1257
BstYI	RGATCY	2 cut(s)	67, 555
BsuRI	GGCC	2 cut(s)	550, 1176
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	4 cut(s)	273, 613, 973, 1266
BtsIMutI	CAGTG	6 cut(s)	394, 457, 586, 1038, 1038, 1169
Cac8I	GCNNGC	1 cut(s)	1273
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	3 cut(s)	1166, 1174, 1291
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	667
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	3 cut(s)	472, 964, 1257
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	9 cut(s)	18, 238, 613, 672, 688, 766, 776, 1141, 1162
DpnI	GATC	3 cut(s)	69, 337, 557
DpnII	GATC	3 cut(s)	67, 335, 555
Eam1104I	CTCTTC	2 cut(s)	105, 1112
EarI	CTCTTC	2 cut(s)	105, 1112
Ecl136II	GAGCTC	1 cut(s)	1275
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	1277
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	1166, 1291
Eco47III	AGCGCT	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	1275
EcoICRI	GAGCTC	1 cut(s)	1275
EcoRII	CCWGG	2 cut(s)	550, 1216
EcoRV	GATATC	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	1277
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	3 cut(s)	475, 967, 1260
FatI	CATG	3 cut(s)	471, 963, 1256
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	515, 999, 1002, 1106, 1177
FokI	GGATG	4 cut(s)	280, 620, 980, 1273
FriOI	GRGCYC	1 cut(s)	1277
Fsp4HI	GCNGC	5 cut(s)	515, 999, 1002, 1106, 1177
FspBI	CTAG	4 cut(s)	339, 345, 848, 1074
GlaI	GCGC	1 cut(s)	876
GluI	GCNGC	5 cut(s)	515, 999, 1002, 1106, 1177
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	2 cut(s)	370, 651
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	2 cut(s)	550, 1176
HapII	CCGG	3 cut(s)	663, 882, 1294
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	877
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	3 cut(s)	475, 967, 1260
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	3 cut(s)	796, 900, 921
HindII	GTYRAC	3 cut(s)	796, 900, 921
HinfI	GANTC	5 cut(s)	121, 140, 368, 752, 780
HpaI	GTTAAC	2 cut(s)	900, 921
HpaII	CCGG	3 cut(s)	663, 882, 1294
HphI	GGTGA	2 cut(s)	659, 723
Hpy166II	GTNNAC	7 cut(s)	189, 350, 713, 796, 900, 921, 1036
Hpy188I	TCNGA	3 cut(s)	261, 320, 481
Hpy188III	TCNNGA	6 cut(s)	179, 377, 467, 527, 559, 986
Hpy8I	GTNNAC	7 cut(s)	189, 350, 713, 796, 900, 921, 1036
HpyAV	CCTTC	6 cut(s)	454, 481, 488, 638, 987, 1118
HpyCH4III	ACNGT	7 cut(s)	148, 452, 710, 1021, 1033, 1051, 1325
HpyCH4IV	ACGT	2 cut(s)	191, 1280
HpyCH4V	TGCA	7 cut(s)	38, 209, 437, 517, 542, 835, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	872
HpyF3I	CTNAG	9 cut(s)	18, 238, 613, 672, 688, 766, 776, 1141, 1162
HpySE526I	ACGT	2 cut(s)	191, 1280
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	3 cut(s)	475, 967, 1260
HspAI	GCGC	1 cut(s)	875
KpnI	GGTACC	1 cut(s)	670
KspAI	GTTAAC	2 cut(s)	900, 921
Kzo9I	GATC	3 cut(s)	67, 335, 555
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	4 cut(s)	501, 988, 1010, 1092
LweI	GCATC	4 cut(s)	822, 853, 931, 1251
MaeI	CTAG	4 cut(s)	339, 345, 848, 1074
MaeII	ACGT	2 cut(s)	191, 1280
MaeIII	GTNAC	7 cut(s)	292, 499, 532, 635, 647, 704, 739
MalI	GATC	3 cut(s)	69, 337, 557
MboI	GATC	3 cut(s)	67, 335, 555
MboII	GAAGA	4 cut(s)	62, 92, 633, 1129
MfeI	CAATTG	1 cut(s)	1284
MflI	RGATCY	2 cut(s)	67, 555
MhlI	GDGCHC	1 cut(s)	1277
MluCI	AATT	8 cut(s)	159, 174, 457, 657, 696, 1062, 1180, 1284
MlyI	GAGTC	1 cut(s)	774
MseI	TTAA	4 cut(s)	6, 456, 899, 920
MslI	CAYNNNNRTG	2 cut(s)	962, 1010
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	3 cut(s)	663, 882, 1294
MspR9I	CCNGG	4 cut(s)	552, 664, 882, 1218
MunI	CAATTG	1 cut(s)	1284
MvaI	CCWGG	2 cut(s)	552, 1218
MwoI	GCNNNNNNNGC	1 cut(s)	872
NciI	CCSGG	2 cut(s)	664, 882
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	3 cut(s)	67, 335, 555
NlaIII	CATG	3 cut(s)	475, 967, 1260
NlaIV	GGNNCC	2 cut(s)	668, 1215
NmuCI	GTSAC	1 cut(s)	647
NspI	RCATGY	1 cut(s)	475
PceI	AGGCCT	1 cut(s)	550
PfeI	GAWTC	4 cut(s)	121, 140, 368, 752
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	5 cut(s)	516, 1000, 1003, 1107, 1178
PleI	GAGTC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	774
Psp124BI	GAGCTC	1 cut(s)	1277
Psp6I	CCWGG	2 cut(s)	550, 1216
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	550, 1216
PspN4I	GGNNCC	2 cut(s)	668, 1215
PspPI	GGNCC	3 cut(s)	1166, 1174, 1291
PsuI	RGATCY	2 cut(s)	67, 555
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	2 cut(s)	962, 1010
SacI	GAGCTC	1 cut(s)	1277
SaqAI	TTAA	4 cut(s)	6, 456, 899, 920
SatI	GCNGC	5 cut(s)	515, 999, 1002, 1106, 1177
Sau3AI	GATC	3 cut(s)	67, 335, 555
Sau96I	GGNCC	3 cut(s)	1166, 1174, 1291
SchI	GAGTC	1 cut(s)	774
ScrFI	CCNGG	4 cut(s)	552, 664, 882, 1218
SduI	GDGCHC	1 cut(s)	1277
SfaNI	GCATC	4 cut(s)	822, 853, 931, 1251
SinI	GGWCC	2 cut(s)	1166, 1291
SmiMI	CAYNNNNRTG	2 cut(s)	962, 1010
SmlI	CTYRAG	1 cut(s)	1265
SmoI	CTYRAG	1 cut(s)	1265
Sse9I	AATT	8 cut(s)	159, 174, 457, 657, 696, 1062, 1180, 1284
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	2 cut(s)	1177, 1211
SspI	AATATT	1 cut(s)	1202
SspMI	CTAG	4 cut(s)	339, 345, 848, 1074
SstI	GAGCTC	1 cut(s)	1277
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	4 cut(s)	550, 662, 880, 1216
TaaI	ACNGT	7 cut(s)	148, 452, 710, 1021, 1033, 1051, 1325
TaiI	ACGT	2 cut(s)	194, 1283
TaqI	TCGA	4 cut(s)	138, 334, 378, 447
TasI	AATT	8 cut(s)	159, 174, 457, 657, 696, 1062, 1180, 1284
TauI	GCSGC	1 cut(s)	1179
TfiI	GAWTC	4 cut(s)	121, 140, 368, 752
Tru1I	TTAA	4 cut(s)	6, 456, 899, 920
Tru9I	TTAA	4 cut(s)	6, 456, 899, 920
TscAI	CASTG	6 cut(s)	394, 457, 586, 1038, 1045, 1176
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	4 cut(s)	514, 998, 1001, 1105
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	9 cut(s)	15, 261, 284, 326, 500, 952, 984, 1055, 1130
TspRI	CASTG	6 cut(s)	394, 457, 586, 1038, 1045, 1176
VpaK11BI	GGWCC	2 cut(s)	1166, 1291
XapI	RAATTY	3 cut(s)	174, 657, 696
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	4 cut(s)	339, 345, 848, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.