Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013739.1

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 7454

Gene Structure 7454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013739.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

cctttatctttcttgcttgttctttgggttagtgcacatgatgttcaatgggcattccgagctacctcttatgatatctcacctcttatgattccgagctacctctttgggttagtgcacatgatgttcaatgggcattacaatcaaagggataattactttcatcctgcgtgggcatggtctactgttaatttgcttccgcgcataccttactctattattgaagctgttgtatggtcttgtgtcgtatactacacaggttttgcccctggtgctgggaaatttttctgtttcatgttttggctattttctgtgcaccaaatggctttgggtctcttccggacagtggcatctcttgcaagagatatggtcattgccaatacatttagatcagctgcattacttgttatatttttgttgggtggattcgttattcccaaagatagaattaagccatggtggcaatgggccttttgggtatcaccactatcatatggacaacgcgctctttctgtcaatgaatttactgctgtaaggtggatcaagatagctcctttaacaaacagaacaattgggcaaaatgtcctccaagaacacaacttaccaaatggtgattattggtattggattggagttggtggtctgttagcttatgcattgcttttcaattgcacagtgactctggccttgacgtacctaaatcgagatgaagtcacaaggtataccagaatcgaagttgcaactcttgtcgaatgtgagcggagtattctcaccaggttctatgcaaaggagactctcaattgtttttctgtcattgttcctgtgtctgttatttgctattggtttcgtgttctattgttattcagaatacaaaaatatggtctgacgcaccgccacgcgcagccacaagcgacgggtcagcaggcggtcaacgtcgagtcaaccacctccgatgcaaaagtcgtcaactacaaacttctgctggaatcggaaagttccgaccgggtcggaaaacactgctctgatccgccgcttatggtggttgtcgtcgcagtcgagcaccagagggaagacgaggaggtagtggcgaagaagtctgcgttggtggcttggtcggaggacgccggagctgggagaaaaagccgggtcgggtcaagttattttcggcgggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

391

Amino Acids

44.7

Weight (kDa)

9.09

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	760
AccI	GTMKAC	3 cut(s)	182, 249, 722
AccII	CGCG	3 cut(s)	202, 504, 899
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	7 cut(s)	200, 760, 892, 926, 1028, 1031, 1168
AclWI	GGATC	2 cut(s)	548, 1019
AcsI	RAATTY	2 cut(s)	281, 521
AcyI	GRCGYC	1 cut(s)	1122
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	3 cut(s)	275, 346, 1131
AgsI	TTSAA	4 cut(s)	47, 130, 224, 667
AjnI	CCWGG	2 cut(s)	268, 773
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AluBI	AGCT	7 cut(s)	62, 99, 227, 395, 551, 650, 1130
AluI	AGCT	7 cut(s)	62, 99, 227, 395, 551, 650, 1130
Alw21I	GWGCWC	4 cut(s)	37, 120, 318, 1062
Alw26I	GTCTC	2 cut(s)	338, 785
Alw44I	GTGCAC	3 cut(s)	33, 116, 314
AlwI	GGATC	2 cut(s)	548, 1019
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	2 cut(s)	468, 684
ApaLI	GTGCAC	3 cut(s)	33, 116, 314
ApeKI	GCWGC	2 cut(s)	395, 901
ApoI	RAATTY	2 cut(s)	281, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	865, 897
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	204, 506, 901
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	2 cut(s)	1004, 1145
AsuHPI	GGTGA	4 cut(s)	72, 474, 623, 763
BaeGI	GKGCMC	3 cut(s)	37, 120, 318
BbsI	GAAGAC	1 cut(s)	1077
Bbv12I	GWGCWC	4 cut(s)	37, 120, 318, 1062
BbvI	GCAGC	2 cut(s)	382, 913
BciT130I	CCWGG	2 cut(s)	270, 775
BcnI	CCSGG	2 cut(s)	1004, 1145
BcoDI	GTCTC	2 cut(s)	338, 785
BglI	GCCNNNNNGGC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	396, 902, 1031
BlsI	GCNGC	3 cut(s)	397, 903, 1032
Bme1390I	CCNGG	4 cut(s)	270, 775, 1004, 1145
BmgT120I	GGNCC	1 cut(s)	468
BmrFI	CCNGG	4 cut(s)	270, 775, 1004, 1145
BmsI	GCATC	2 cut(s)	359, 943
BpiI	GAAGAC	1 cut(s)	1077
BpuMI	CCSGG	2 cut(s)	1004, 1145
BsaHI	GRCGYC	1 cut(s)	1122
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	268, 455
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 346, 1131
Bse3DI	GCAATG	3 cut(s)	372, 470, 656
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	270, 775
BseDI	CCNNGG	2 cut(s)	268, 455
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	275, 346, 1131
BseMI	GCAATG	3 cut(s)	372, 470, 656
BseRI	GAGGAG	1 cut(s)	1091
BseSI	GKGCMC	3 cut(s)	37, 120, 318
BseXI	GCAGC	2 cut(s)	382, 913
BseYI	CCCAGC	2 cut(s)	275, 1130
Bsh1236I	CGCG	3 cut(s)	202, 504, 899
Bsh1285I	CGRYCG	1 cut(s)	1003
BshFI	GGCC	2 cut(s)	470, 686
BsiEI	CGRYCG	1 cut(s)	1003
BsiHKAI	GWGCWC	4 cut(s)	37, 120, 318, 1062
BsiSI	CCGG	4 cut(s)	340, 1003, 1125, 1144
BslI	CCNNNNNNNGG	3 cut(s)	275, 346, 1131
BsmAI	GTCTC	2 cut(s)	338, 785
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	470, 686
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	4 cut(s)	37, 120, 318, 1062
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	389, 540, 1024
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	7 cut(s)	200, 760, 892, 926, 1028, 1031, 1168
BspANI	GGCC	2 cut(s)	470, 686
BspEI	TCCGGA	1 cut(s)	339
BspFNI	CGCG	3 cut(s)	202, 504, 899
BspPI	GGATC	2 cut(s)	548, 1019
BspTNI	GGTCTC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	760
BsrDI	GCAATG	3 cut(s)	372, 470, 656
BssECI	CCNNGG	2 cut(s)	268, 455
BssMI	GATC	3 cut(s)	389, 540, 1024
BssNAI	GTATAC	2 cut(s)	250, 723
BssNI	GRCGYC	1 cut(s)	1122
BssT1I	CCWWGG	1 cut(s)	455
Bst1107I	GTATAC	2 cut(s)	250, 723
Bst2UI	CCWGG	2 cut(s)	270, 775
Bst4CI	ACNGT	3 cut(s)	187, 346, 676
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	1122
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	924
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	3 cut(s)	202, 504, 899
BstHHI	GCGC	3 cut(s)	204, 506, 901
BstKTI	GATC	3 cut(s)	392, 543, 1027
BstMAI	GTCTC	2 cut(s)	338, 785
BstMBI	GATC	3 cut(s)	389, 540, 1024
BstMCI	CGRYCG	1 cut(s)	1003
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 272, 356, 460, 1106
BstNI	CCWGG	2 cut(s)	270, 775
BstSCI	CCNGG	4 cut(s)	268, 773, 1002, 1143
BstSLI	GKGCMC	3 cut(s)	37, 120, 318
BstUI	CGCG	3 cut(s)	202, 504, 899
BstV1I	GCAGC	2 cut(s)	382, 913
BstV2I	GAAGAC	1 cut(s)	1077
BstZ17I	GTATAC	2 cut(s)	250, 723
BsuRI	GGCC	2 cut(s)	470, 686
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	1015
BtsIMutI	CAGTG	3 cut(s)	351, 681, 1015
Cac8I	GCNNGC	1 cut(s)	924
CfoI	GCGC	3 cut(s)	204, 506, 901
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	2 cut(s)	895, 1130
CsiI	ACCWGGT	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	5 cut(s)	38, 121, 177, 295, 456
CviQI	GTAC	1 cut(s)	694
DpnI	GATC	3 cut(s)	391, 542, 1026
DpnII	GATC	3 cut(s)	389, 540, 1024
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	1017
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	268, 773
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	5 cut(s)	41, 124, 180, 298, 459
FatI	CATG	5 cut(s)	37, 120, 176, 294, 455
FauI	CCCGC	1 cut(s)	1161
FauNDI	CATATG	1 cut(s)	493
FblI	GTMKAC	3 cut(s)	182, 249, 722
Fnu4HI	GCNGC	3 cut(s)	396, 902, 1031
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	396, 902, 1031
GlaI	GCGC	3 cut(s)	203, 505, 900
GluI	GCNGC	3 cut(s)	396, 902, 1031
GsaI	CCCAGC	2 cut(s)	279, 1134
HaeIII	GGCC	2 cut(s)	470, 686
HapII	CCGG	4 cut(s)	340, 1003, 1125, 1144
HgaI	GACGC	2 cut(s)	895, 1130
HhaI	GCGC	3 cut(s)	204, 506, 901
Hin1I	GRCGYC	1 cut(s)	1122
Hin1II	CATG	5 cut(s)	41, 124, 180, 298, 459
Hin6I	GCGC	3 cut(s)	202, 504, 899
HinP1I	GCGC	3 cut(s)	202, 504, 899
HincII	GTYRAC	3 cut(s)	931, 942, 967
HindII	GTYRAC	3 cut(s)	931, 942, 967
HinfI	GANTC	7 cut(s)	91, 426, 679, 729, 793, 938, 986
HpaII	CCGG	4 cut(s)	340, 1003, 1125, 1144
HphI	GGTGA	4 cut(s)	72, 474, 623, 763
Hpy166II	GTNNAC	9 cut(s)	35, 118, 183, 250, 316, 723, 931, 942, 967
Hpy188III	TCNNGA	3 cut(s)	340, 544, 704
Hpy8I	GTNNAC	9 cut(s)	35, 118, 183, 250, 316, 723, 931, 942, 967
Hpy99I	CGWCG	3 cut(s)	916, 938, 1052
HpyCH4III	ACNGT	3 cut(s)	187, 346, 676
HpyCH4IV	ACGT	2 cut(s)	692, 933
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 272, 356, 460, 1106
HpySE526I	ACGT	2 cut(s)	692, 933
Hsp92I	GRCGYC	1 cut(s)	1122
Hsp92II	CATG	5 cut(s)	41, 124, 180, 298, 459
HspAI	GCGC	3 cut(s)	202, 504, 899
Kpn2I	TCCGGA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	389, 540, 1024
LmnI	GCTCC	2 cut(s)	556, 1127
Lsp1109I	GCAGC	2 cut(s)	382, 913
LweI	GCATC	2 cut(s)	359, 943
MabI	ACCWGGT	1 cut(s)	773
MaeII	ACGT	2 cut(s)	692, 933
MaeIII	GTNAC	2 cut(s)	676, 712
MalI	GATC	3 cut(s)	391, 542, 1026
MbiI	CCGCTC	1 cut(s)	760
MboI	GATC	3 cut(s)	389, 540, 1024
MboII	GAAGA	3 cut(s)	328, 1082, 1102
MfeI	CAATTG	3 cut(s)	570, 667, 799
MhlI	GDGCHC	4 cut(s)	37, 120, 318, 1062
MluCI	AATT	8 cut(s)	154, 190, 281, 447, 521, 570, 667, 799
MlyI	GAGTC	3 cut(s)	673, 787, 947
MmeI	TCCRAC	3 cut(s)	988, 1023, 1095
MnlI	CCTC	9 cut(s)	76, 93, 113, 596, 958, 1059, 1069, 1072, 1111
Mph1103I	ATGCAT	1 cut(s)	658
MroI	TCCGGA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	3 cut(s)	189, 450, 557
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	4 cut(s)	340, 1003, 1125, 1144
MspR9I	CCNGG	4 cut(s)	270, 775, 1004, 1145
MunI	CAATTG	3 cut(s)	570, 667, 799
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	2 cut(s)	270, 775
MvnI	CGCG	3 cut(s)	202, 504, 899
MwoI	GCNNNNNNNGC	5 cut(s)	59, 272, 356, 460, 1106
NciI	CCSGG	2 cut(s)	1004, 1145
NcoI	CCATGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	3 cut(s)	389, 540, 1024
NlaIII	CATG	5 cut(s)	41, 124, 180, 298, 459
NmuCI	GTSAC	2 cut(s)	676, 712
NsiI	ATGCAT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	1053
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	4 cut(s)	91, 426, 729, 986
PflFI	GACNNNGTC	1 cut(s)	1004
PkrI	GCNGC	3 cut(s)	397, 903, 1032
PleI	GAGTC	3 cut(s)	673, 787, 946
PpsI	GAGTC	3 cut(s)	673, 787, 946
Psp6I	CCWGG	2 cut(s)	268, 773
PspFI	CCCAGC	2 cut(s)	275, 1130
PspGI	CCWGG	2 cut(s)	268, 773
PspPI	GGNCC	1 cut(s)	468
PsrI	GAACNNNNNNTAC	2 cut(s)	585, 617
PsyI	GACNNNGTC	1 cut(s)	1004
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SaqAI	TTAA	3 cut(s)	189, 450, 557
SatI	GCNGC	3 cut(s)	396, 902, 1031
Sau3AI	GATC	3 cut(s)	389, 540, 1024
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	3 cut(s)	673, 787, 947
ScrFI	CCNGG	4 cut(s)	270, 775, 1004, 1145
SduI	GDGCHC	4 cut(s)	37, 120, 318, 1062
SexAI	ACCWGGT	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	359, 943
Sse9I	AATT	8 cut(s)	154, 190, 281, 447, 521, 570, 667, 799
SsiI	CCGC	7 cut(s)	200, 760, 892, 926, 1028, 1031, 1168
StyD4I	CCNGG	4 cut(s)	268, 773, 1002, 1143
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	187, 346, 676
TaiI	ACGT	2 cut(s)	695, 936
TaqI	TCGA	5 cut(s)	703, 732, 750, 936, 1056
TasI	AATT	8 cut(s)	154, 190, 281, 447, 521, 570, 667, 799
TauI	GCSGC	1 cut(s)	1033
TfiI	GAWTC	4 cut(s)	91, 426, 729, 986
Tru1I	TTAA	3 cut(s)	189, 450, 557
Tru9I	TTAA	3 cut(s)	189, 450, 557
TscAI	CASTG	3 cut(s)	351, 681, 1022
TseFI	GTSAC	2 cut(s)	676, 712
TseI	GCWGC	2 cut(s)	395, 901
Tsp45I	GTSAC	2 cut(s)	676, 712
TspDTI	ATGAA	4 cut(s)	152, 283, 534, 723
TspRI	CASTG	3 cut(s)	351, 681, 1022
Tth111I	GACNNNGTC	1 cut(s)	1004
VneI	GTGCAC	3 cut(s)	33, 116, 314
XapI	RAATTY	2 cut(s)	281, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XmiI	GTMKAC	3 cut(s)	182, 249, 722
XmnI	GAANNNNTTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.