Rh4DG388400
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
60452954 .. 60454857
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG388400.1

Sequence Viewer

Length: 1260 bp
ATGATGTTCAATGGGCATTCCGAGCTACCTCTTATGATATCTCAGCTCCCAGTCTTTTACAAGCAAAGGGATAATTACTTTCATCCTGCGTGGGCATGGTCTGGTGTTAATTTACTTCTGCGCATACCTTACTCTATTATTGAAGCTGTCGTATGGTCTTGTGTCGTATACTACACAGTTGGTTTTGCCCCTGGTGCTGGGAAATTTTTCCGTTTCATGTTTTTGCTATTTTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACATTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGCTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACTTACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTGGTCTGTTAGCTTATGCATTGCTTTTCAATTGCACAGTGACTCTGGCCTTGACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACCGTGTCTAGCCCAAAATCAGCTGGAGGTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAATCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAAGGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATTAAGATATCTGATTACCCGAGAGAGCAACGTACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTTCTTCTGCTCTTCGCCTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTCGAAGAAGTAATGGAACTAGTAGAGCTTGATACTCTAAGGCATGTTTTGGTTGGTGTGCCAGGCAGTTCAGGCTATCAACAGAGCAAAGAAAACGCTTAA

Protein Analysis

419

Amino Acids

46.49

Weight (kDa)

8.83

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 1 - 149 1e-38 ABC-2 type transporter
PDR_assoc PF08370 154 - 216 5.4e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 289 - 404 7.5e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 951
Acc16I TGCGCA 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 876
AccI GTMKAC 2 cut(s) 168, 838
AccII CGCG 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 1 cut(s) 876
AclWI GGATC 2 cut(s) 319, 470
AcsI RAATTY 2 cut(s) 203, 443
AcyI GRCGYC 1 cut(s) 948
AfaI GTAC 3 cut(s) 617, 638, 1024
AfiI CCNNNNNNNGG 5 cut(s) 197, 268, 745, 746, 1126
AgsI TTSAA 3 cut(s) 10, 143, 589
AhlI ACTAGT 1 cut(s) 1177
AjnI CCWGG 3 cut(s) 190, 889, 1219
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 260, 1136
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 2 cut(s) 319, 470
Ama87I CYCGRG 1 cut(s) 1009
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 2 cut(s) 390, 606
ApaLI GTGCAC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 317, 680
ApoI RAATTY 2 cut(s) 203, 443
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 123, 428
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 396, 545, 879, 883
AvaI CYCGRG 1 cut(s) 1009
BaeGI GKGCMC 1 cut(s) 240
BauI CACGAG 1 cut(s) 1151
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 304, 667
BccI CCATC 2 cut(s) 680, 937
BciT130I CCWGG 3 cut(s) 192, 891, 1221
BciVI GTATCC 1 cut(s) 968
BcoDI GTCTC 2 cut(s) 260, 1136
BcuI ACTAGT 1 cut(s) 1177
BfaI CTAG 4 cut(s) 711, 918, 1032, 1178
BfmI CTRYAG 1 cut(s) 681
BfuI GTATCC 1 cut(s) 968
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 2 cut(s) 318, 681
BlsI GCNGC 2 cut(s) 319, 682
Bme1390I CCNGG 3 cut(s) 192, 891, 1221
BmeT110I CYCGRG 1 cut(s) 1009
BmgT120I GGNCC 1 cut(s) 390
BmrFI CCNGG 3 cut(s) 192, 891, 1221
BmrI ACTGGG 2 cut(s) 44, 734
BmsI GCATC 1 cut(s) 281
BmuI ACTGGG 2 cut(s) 44, 734
BpmI CTGGAG 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 1059
BsaHI GRCGYC 1 cut(s) 948
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 190, 377
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 268, 745, 746, 1126
Bse1I ACTGG 3 cut(s) 50, 740, 973
Bse3DI GCAATG 3 cut(s) 294, 392, 578
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 3 cut(s) 192, 891, 1221
BseDI CCNNGG 2 cut(s) 190, 377
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 5 cut(s) 197, 268, 745, 746, 1126
BseMI GCAATG 3 cut(s) 294, 392, 578
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 3 cut(s) 50, 740, 973
BseRI GAGGAG 2 cut(s) 1062, 1103
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 304, 667
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 2 cut(s) 392, 608
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 5 cut(s) 197, 268, 745, 746, 1126
BsmAI GTCTC 2 cut(s) 260, 1136
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 392, 608
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 311, 462, 753
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 1 cut(s) 876
BspANI GGCC 2 cut(s) 392, 608
BspCNI CTCAG 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 2 cut(s) 319, 470
BspQI GCTCTTC 1 cut(s) 1119
BspTNI GGTCTC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 876
BsrDI GCAATG 3 cut(s) 294, 392, 578
BsrI ACTGG 3 cut(s) 50, 740, 973
BssECI CCNNGG 2 cut(s) 190, 377
BssMI GATC 3 cut(s) 311, 462, 753
BssNAI GTATAC 2 cut(s) 169, 839
BssNI GRCGYC 1 cut(s) 948
BssSI CACGAG 1 cut(s) 1151
BssT1I CCWWGG 1 cut(s) 377
Bst1107I GTATAC 2 cut(s) 169, 839
Bst2BI CACGAG 1 cut(s) 1151
Bst2UI CCWGG 3 cut(s) 192, 891, 1221
Bst4CI ACNGT 5 cut(s) 178, 598, 646, 706, 1084
Bst6I CTCTTC 2 cut(s) 263, 1119
BstACI GRCGYC 1 cut(s) 948
BstAPI GCANNNNNTGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 42, 629, 1196
BstDSI CCRYGG 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 1124
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 2 cut(s) 123, 428
BstKTI GATC 3 cut(s) 314, 465, 756
BstMAI GTCTC 2 cut(s) 260, 1136
BstMBI GATC 3 cut(s) 311, 462, 753
BstMWI GCNNNNNNNGC 6 cut(s) 22, 194, 278, 382, 1037, 1230
BstNI CCWGG 3 cut(s) 192, 891, 1221
BstNSI RCATGY 1 cut(s) 1205
BstSCI CCNGG 3 cut(s) 190, 889, 1219
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 304, 667
BstXI CCANNNNNNTGG 1 cut(s) 943
BstZ17I GTATAC 2 cut(s) 169, 839
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 2 cut(s) 392, 608
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 603, 651
CfoI GCGC 2 cut(s) 123, 428
Cfr13I GGNCC 1 cut(s) 390
CsiI ACCWGGT 1 cut(s) 889
Csp6I GTAC 3 cut(s) 616, 637, 1023
CviAII CATG 4 cut(s) 96, 217, 378, 1202
CviQI GTAC 3 cut(s) 616, 637, 1023
DdeI CTNAG 3 cut(s) 42, 629, 1196
DpnI GATC 3 cut(s) 313, 464, 755
DpnII GATC 3 cut(s) 311, 462, 753
Eam1104I CTCTTC 2 cut(s) 263, 1119
EarI CTCTTC 2 cut(s) 263, 1119
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 2 cut(s) 39, 999
Eco88I CYCGRG 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 1124
EcoRII CCWGG 3 cut(s) 190, 889, 1219
EcoRV GATATC 2 cut(s) 39, 999
EcoT14I CCWWGG 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 4 cut(s) 99, 220, 381, 1205
FatI CATG 4 cut(s) 95, 216, 377, 1201
FauNDI CATATG 1 cut(s) 415
FblI GTMKAC 2 cut(s) 168, 838
Fnu4HI GCNGC 2 cut(s) 318, 681
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 318, 681
FspBI CTAG 4 cut(s) 711, 918, 1032, 1178
FspI TGCGCA 1 cut(s) 122
GlaI GCGC 2 cut(s) 122, 427
GluI GCNGC 2 cut(s) 318, 681
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 2 cut(s) 392, 608
HapII CCGG 1 cut(s) 262
HhaI GCGC 2 cut(s) 123, 428
Hin1I GRCGYC 1 cut(s) 948
Hin1II CATG 4 cut(s) 99, 220, 381, 1205
Hin6I GCGC 2 cut(s) 121, 426
HinP1I GCGC 2 cut(s) 121, 426
HinfI GANTC 6 cut(s) 348, 601, 673, 845, 1093, 1149
HpaII CCGG 1 cut(s) 262
HphI GGTGA 4 cut(s) 396, 545, 879, 883
Hpy166II GTNNAC 4 cut(s) 169, 238, 808, 839
Hpy188I TCNGA 2 cut(s) 22, 1003
Hpy188III TCNNGA 2 cut(s) 262, 466
Hpy8I GTNNAC 4 cut(s) 169, 238, 808, 839
HpyAV CCTTC 4 cut(s) 662, 862, 977, 1130
HpyCH4III ACNGT 5 cut(s) 178, 598, 646, 706, 1084
HpyCH4IV ACGT 3 cut(s) 614, 948, 1021
HpyCH4V TGCA 7 cut(s) 238, 281, 320, 578, 594, 683, 856
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 194, 278, 382, 1037, 1230
HpyF3I CTNAG 3 cut(s) 42, 629, 1196
HpySE526I ACGT 3 cut(s) 614, 948, 1021
Hsp92I GRCGYC 1 cut(s) 948
Hsp92II CATG 4 cut(s) 99, 220, 381, 1205
HspAI GCGC 2 cut(s) 121, 426
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 3 cut(s) 311, 462, 753
LguI GCTCTTC 1 cut(s) 1119
LmnI GCTCC 3 cut(s) 51, 478, 923
Lsp1109I GCAGC 2 cut(s) 304, 667
LweI GCATC 1 cut(s) 281
MabI ACCWGGT 1 cut(s) 889
MaeI CTAG 4 cut(s) 711, 918, 1032, 1178
MaeII ACGT 3 cut(s) 614, 948, 1021
MaeIII GTNAC 5 cut(s) 598, 731, 793, 828, 1078
MalI GATC 3 cut(s) 313, 464, 755
MbiI CCGCTC 1 cut(s) 876
MboI GATC 3 cut(s) 311, 462, 753
MboII GAAGA 4 cut(s) 250, 1098, 1106, 1175
MfeI CAATTG 2 cut(s) 492, 589
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 6 cut(s) 73, 109, 203, 443, 492, 589
MlyI GAGTC 4 cut(s) 595, 682, 1102, 1143
MnlI CCTC 5 cut(s) 39, 518, 722, 1081, 1083
Mph1103I ATGCAT 1 cut(s) 580
MroI TCCGGA 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 6 cut(s) 108, 372, 479, 773, 993, 1258
MslI CAYNNNNRTG 1 cut(s) 941
MspA1I CMGCKG 2 cut(s) 317, 725
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 192, 891, 1221
MunI CAATTG 2 cut(s) 492, 589
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 3 cut(s) 192, 891, 1221
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 6 cut(s) 22, 194, 278, 382, 1037, 1230
NcoI CCATGG 1 cut(s) 377
NdeI CATATG 1 cut(s) 415
NdeII GATC 3 cut(s) 311, 462, 753
NlaIII CATG 4 cut(s) 99, 220, 381, 1205
NmuCI GTSAC 2 cut(s) 598, 828
NsbI TGCGCA 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 1 cut(s) 1205
PciSI GCTCTTC 1 cut(s) 1119
PcsI WCGNNNNNNNCGW 1 cut(s) 1158
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 348, 845
PflFI GACNNNGTC 1 cut(s) 706
PkrI GCNGC 2 cut(s) 319, 682
PleI GAGTC 4 cut(s) 595, 681, 1101, 1143
PpsI GAGTC 4 cut(s) 595, 681, 1101, 1143
Psp6I CCWGG 3 cut(s) 190, 889, 1219
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 3 cut(s) 190, 889, 1219
PspPI GGNCC 1 cut(s) 390
PsrI GAACNNNNNNTAC 2 cut(s) 507, 539
PstI CTGCAG 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 706
PvuII CAGCTG 2 cut(s) 317, 725
RsaI GTAC 3 cut(s) 617, 638, 1024
RsaNI GTAC 3 cut(s) 616, 637, 1023
RseI CAYNNNNRTG 1 cut(s) 941
SapI GCTCTTC 1 cut(s) 1119
SaqAI TTAA 6 cut(s) 108, 372, 479, 773, 993, 1258
SatI GCNGC 2 cut(s) 318, 681
Sau3AI GATC 3 cut(s) 311, 462, 753
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 4 cut(s) 595, 682, 1102, 1143
ScrFI CCNGG 3 cut(s) 192, 891, 1221
SduI GDGCHC 1 cut(s) 240
SexAI ACCWGGT 1 cut(s) 889
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 941
SmlI CTYRAG 1 cut(s) 1074
SmoI CTYRAG 1 cut(s) 1074
SpeI ACTAGT 1 cut(s) 1177
Sse9I AATT 6 cut(s) 73, 109, 203, 443, 492, 589
SsiI CCGC 1 cut(s) 876
SspMI CTAG 4 cut(s) 711, 918, 1032, 1178
StyD4I CCNGG 3 cut(s) 190, 889, 1219
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 5 cut(s) 178, 598, 646, 706, 1084
TaiI ACGT 3 cut(s) 617, 951, 1024
TaqI TCGA 3 cut(s) 848, 866, 1161
TasI AATT 6 cut(s) 73, 109, 203, 443, 492, 589
TfiI GAWTC 2 cut(s) 348, 845
Tru1I TTAA 6 cut(s) 108, 372, 479, 773, 993, 1258
Tru9I TTAA 6 cut(s) 108, 372, 479, 773, 993, 1258
TscAI CASTG 2 cut(s) 603, 651
TseFI GTSAC 2 cut(s) 598, 828
TseI GCWGC 2 cut(s) 317, 680
Tsp45I GTSAC 2 cut(s) 598, 828
TspDTI ATGAA 4 cut(s) 71, 205, 456, 839
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 603, 651
Tth111I GACNNNGTC 1 cut(s) 706
VneI GTGCAC 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 1124
XapI RAATTY 2 cut(s) 203, 443
XceI RCATGY 1 cut(s) 1205
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmiI GTMKAC 2 cut(s) 168, 838
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 4 cut(s) 711, 918, 1032, 1178
ZraI GACGTC 1 cut(s) 949
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.