Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Reverse (-)

47001781 .. 47003069

Gene Structure 1289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTTTTTGCTATTTTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTTGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGATGTAAGGTGGATCAAGATAGCTCCTTTAACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

9.98

Isoelectric Point (pI)

19.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 77	1.7e-21	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AccIII	TCCGGA	1 cut(s)	45
AclWI	GGATC	2 cut(s)	103, 254
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	101, 257
AluI	AGCT	2 cut(s)	101, 257
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	103, 254
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse3DI	GCAATG	2 cut(s)	78, 176
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	2 cut(s)	78, 176
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	95, 246
Bsp19I	CCATGG	1 cut(s)	161
BspANI	GGCC	1 cut(s)	176
BspEI	TCCGGA	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	210
BspPI	GGATC	2 cut(s)	103, 254
BspTNI	GGTCTC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	78, 176
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	2 cut(s)	95, 246
BssT1I	CCWWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	98, 249
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	95, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 166
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	174
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	5 cut(s)	32, 101, 160, 176, 257
CviKI_1	RGCY	5 cut(s)	32, 101, 160, 176, 257
DpnI	GATC	2 cut(s)	97, 248
DpnII	GATC	2 cut(s)	95, 246
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	165
FaiI	YATR	5 cut(s)	74, 116, 163, 199, 201
FatI	CATG	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	46, 250
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	22, 65, 104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 166
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	210
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	95, 246
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	65
MalI	GATC	2 cut(s)	97, 248
MboI	GATC	2 cut(s)	95, 246
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	2 cut(s)	156, 263
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	62, 166
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	95, 246
NlaIII	CATG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	156, 263
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	95, 246
Sau96I	GGNCC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	103, 245, 259
SfaNI	GCATC	1 cut(s)	65
SgeI	CNNG	7 cut(s)	58, 74, 78, 122, 174, 221, 262
Sse9I	AATT	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	52
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	156, 263
Tru9I	TTAA	2 cut(s)	156, 263
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.