Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

40798902 .. 40802822

Gene Structure 3921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0261800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGCAACACCAGCAGCACCACCAGGGTCGATCTAGCCTCCGAGATTGCTCGAGTACTTCTAACCCACAAAGCAGACATAACATCATCAAAGGAGAAATCATCATTGTCCAAAGTGATAGAAAATCAGGTTCGGGGAGATCAGCTTCTATTCGGATATATAGCTGTACAGAAGTCGATCCAAAAACTGGAAAAGGAAAGTTGAGTGAGCAAGCATACCTCAAACGTGGAAAAACCAAAACAAGTTGTGGTGAAAGAACTACAACATATAATGTCAAGTTCCATGTTGAGCCAAACTTCGGGACTCCAGGAGCTCTGGTCATAAGAAACCCAAAGAACAACAGATTCTTCCTCAAATATGCAGCTGTCCAAATTCAGAACAGTCAGATCATCCAGTTCGACTGTTACTCATGGGTATACTCATTCAAAAAGACCAAGAATTTTGATCGGATTTTCTTCTCAAACACTAAATATCTTCCAAGCCAAACACCCCAAGCTCTCATGAAACTGAGAAAGGAAGAACTTGGTAGCTTGAGAGGAAATGGAAGTGGGGAGAGGAAAGAATGGGATCGAATTTACGACTATGACTACTACAATGATCTTGGTGATCCTGATAAAGGTCCAGAACACAAGAGACCTGTCTTGGGTGGGTCTGCATTACTTCCCTATCCTCGCAGAGGAAGAACTGGTCGCCCTTCTAGCAATGCAGATCCTTTGACTGAGAGCCGGCCATGTACCACTAACCTGGATATATATGTTCCCCCGGATGAGAGGTTCAGCCCCAAGAAAAAATCTGAGTTCATATCCAATTCAATCCAGGCAGCTCTGCATTTCCTGATCCTTGAGGGAAAGGGTTCCAAGCATCTTGAGTCATTTGATGAGATACACGCCATGTTTTCTGCAAACGAGAGCCTAGTGATTGAGGGGTCGCTCAAAGAGAAACTGAAAGCTATGGTACCAAACGAGCTTTATAAAGATACTACACATGCAATCAAGAAAACCGTGAAATTTCCACTTCCTCAAATACTAGCAGAAAATGAATTTGCATGGAAGGATGACGAAGAGTTTGGGCGCCAAATGCTTGCAGGAGTTAATCCAGCACGAATACAATCCCTGGAGGTATTTCCTCCGCAAAGCAAACATGGAGCTGTGAGCTCAATAAAGTCATCACACATAGAGCACAACCTTGATGGCCTGACTGTTGCCCAGGCAATGAACTACTGGAGGATACTCATCTTGGATCACCATGACTATCTCATGCCCTTCTTGAGCAGAATCAACACAAACGACGTTTGTATCTATGCATCCCGCACACTACTTTTTTTGAAGAGTGATTCCACGCTAAGGCCACTAGCAATTGAACTTAGTTTGCCAGGCTCACCTAGAGGTAATGAGATCAATCGGGTACTTGTTCCAGCTAGTCAGGGTGAAGCAGCAGCACTGTGGCACTATGCTAAGGCTCATGTTGCAGTTAATGACTCTGTTTATCATCAACTGGTTAGTCATTGGTTGCATACACATGCAGTGGTCGAGCCGTTCATCATTGCTACTAGAAGACAGCTAAGTTTGATGCATCCAATCCATTGGCTACTAGATCCTCATTTCAAAGACACCATGCACGCGAATGCACTGGCCCGGAGCAAACTCATTAACTCTGGAGGAATCTTTGAGAAGATACTGTTTTCGGCTGAAATCTCCATGCAGCTATCAGCTGAGCTATACAAGGAGTGGAGATTTGATGAGCAAGCCCTTCCTGCTGATCTACTTAAAAGAGGTATGGCCCTACAAGACCCTGATCCAGATAACCCTACTGGGATTCAGCTCCTGTTCCAGGACTATCCCTATGGTGCAGATGGACTTGAGATATGGATAGCCATCCAGGCATGGGTTACAGATTTTTGCATGCTCTTCTATGCTGATGATGCTTCTGTAAGATCTGATGAAGAAGTCCAAGCATGGTGGTCAGAAATTCGAAATGTTGGCCACGGTGATAAGCGCAATGAGACATGGTGGTATGAAATGACATCACGGAAGGACCTAATCCAAGCTTTGACAACTTTGATATGGATTGCATCTGCCCTTCATGCTTCAGTGAACTTTGGGCAATATGCATATAATGGTTATCCTCTAAATCGTACCACACTATGCCGAAGGTTCATTCCACAGGAAGGAACATTTGAGTATGCTGAGTTCTTAGGGGATCCAGACAAATACTATCTCAACATGTTGCCTGAAAGAGATAAGATGATCTTGGGTATAGCAATAGCAGAGGTACTCTCAAAACACACATCTGATGAAGTGTATTTGGGCCAGAGGTTATCATCATTATCAATAAAGAATGAAGAGATTGGCCAGAAGTTTGAAAAGTTCAACAGAGAACTTCGAAATATAGAGAAAAGAATTGAGGACAAGAATGCCGATGCCAAGCTTAAAAACAGACAGGGCTGTGCCAAGATGCCTTACATGCTTTTGTACCCTGATACCTCCAATGTTGAATCCAAGGGGGGCAGCACGGGGAAGGGGATTCCTAATAGTATATCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

847

Amino Acids

96.41

Weight (kDa)

8.41

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	58 - 152	4.4e-07	PLAT/LH2 domain
Lipoxygenase	PF00305	166 - 825	1.5e-273	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	969
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	2 cut(s)	952, 1068
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	1619
AciI	CCGC	2 cut(s)	1127, 1306
AcoI	YGGCCR	3 cut(s)	725, 1978, 2347
AcsI	RAATTY	6 cut(s)	369, 436, 570, 1004, 1037, 1965
AcuI	CTGAAG	1 cut(s)	2070
AcyI	GRCGYC	1 cut(s)	1069
AfaI	GTAC	8 cut(s)	55, 166, 733, 954, 1404, 2134, 2271, 2471
AfiI	CCNNNNNNNGG	9 cut(s)	185, 296, 614, 641, 674, 1341, 1828, 1882, 2165
AflIII	ACRYGT	1 cut(s)	2220
AgsI	TTSAA	8 cut(s)	424, 810, 1324, 1358, 1603, 2360, 2368, 2492
AjnI	CCWGG	9 cut(s)	21, 304, 741, 813, 1110, 1203, 1369, 1827, 1875
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
Alw21I	GWGCWC	3 cut(s)	313, 1154, 1179
Alw26I	GTCTC	2 cut(s)	625, 1994
AlwNI	CAGNNNCTG	1 cut(s)	1822
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	8 cut(s)	725, 1189, 1343, 1629, 1776, 1978, 2305, 2347
ApeKI	GCWGC	7 cut(s)	13, 359, 818, 1430, 1433, 1699, 2505
ApoI	RAATTY	6 cut(s)	369, 436, 570, 1004, 1037, 1965
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
Asp700I	GAANNNNTTC	1 cut(s)	850
Asp718I	GGTACC	1 cut(s)	952
AspLEI	GCGC	2 cut(s)	1071, 1995
AspS9I	GGNCC	5 cut(s)	617, 1630, 1777, 2032, 2305
AsuC2I	CCSGG	2 cut(s)	761, 1633
AsuHPI	GGTGA	6 cut(s)	260, 614, 1232, 1368, 1436, 1997
AsuII	TTCGAA	2 cut(s)	1969, 2380
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	617, 2032
BaeI	ACNNNNGTAYC	2 cut(s)	1276, 1309
BalI	TGGCCA	2 cut(s)	1980, 2349
BamHI	GGATCC	1 cut(s)	2197
BanI	GGYRCC	2 cut(s)	952, 1068
BanII	GRGCYC	2 cut(s)	313, 1154
BbsI	GAAGAC	1 cut(s)	1558
Bbv12I	GWGCWC	3 cut(s)	313, 1154, 1179
BbvI	GCAGC	7 cut(s)	25, 371, 830, 1442, 1445, 1711, 2517
BccI	CCATC	3 cut(s)	1181, 1844, 1880
BceAI	ACGGC	1 cut(s)	1516
BciT130I	CCWGG	9 cut(s)	23, 306, 743, 815, 1112, 1205, 1371, 1829, 1877
BciVI	GTATCC	1 cut(s)	1218
BcnI	CCSGG	2 cut(s)	761, 1633
BcoDI	GTCTC	2 cut(s)	625, 1994
BfaI	CTAG	9 cut(s)	33, 696, 911, 1025, 1349, 1380, 1416, 1548, 1589
BfoI	RGCGCY	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	1218
BglI	GCCNNNNNGGC	1 cut(s)	1877
BglII	AGATCT	1 cut(s)	1931
BisI	GCNGC	7 cut(s)	14, 360, 819, 1431, 1434, 1700, 2506
BlpI	GCTNAGC	1 cut(s)	1710
BlsI	GCNGC	7 cut(s)	15, 361, 820, 1432, 1435, 1701, 2507
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	617, 2032
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	5 cut(s)	617, 1630, 1777, 2032, 2305
BmiI	GGNNCC	4 cut(s)	853, 954, 1070, 2199
BmrI	ACTGGG	1 cut(s)	1818
BmsI	GCATC	8 cut(s)	868, 1310, 1557, 1579, 1909, 2078, 2407, 2442
BmuI	ACTGGG	1 cut(s)	1818
BpiI	GAAGAC	1 cut(s)	1558
BplI	GAGNNNNNCTC	2 cut(s)	2258, 2290
BpmI	CTGGAG	4 cut(s)	288, 1133, 1240, 1674
Bpu10I	CCTNAGC	2 cut(s)	1340, 1452
Bpu1102I	GCTNAGC	1 cut(s)	1710
Bpu14I	TTCGAA	2 cut(s)	1969, 2380
BpuEI	CTTGAG	5 cut(s)	550, 860, 884, 1285, 1877
BpuMI	CCSGG	2 cut(s)	761, 1633
BsaBI	GATNNNNATC	2 cut(s)	1229, 1871
BsaHI	GRCGYC	1 cut(s)	1069
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	6 cut(s)	22, 759, 1110, 1203, 1981, 2496
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	9 cut(s)	185, 296, 614, 641, 674, 1341, 1828, 1882, 2165
Bse118I	RCCGGY	1 cut(s)	723
Bse1I	ACTGG	7 cut(s)	190, 391, 688, 1223, 1497, 1632, 1813
Bse3DI	GCAATG	4 cut(s)	706, 1215, 1539, 2002
Bse8I	GATNNNNATC	2 cut(s)	1229, 1871
BseBI	CCWGG	9 cut(s)	23, 306, 743, 815, 1112, 1205, 1371, 1829, 1877
BseDI	CCNNGG	6 cut(s)	22, 759, 1110, 1203, 1981, 2496
BseGI	GGATG	6 cut(s)	387, 769, 1057, 1301, 1570, 1872
BseJI	GATNNNNATC	2 cut(s)	1229, 1871
BseLI	CCNNNNNNNGG	9 cut(s)	185, 296, 614, 641, 674, 1341, 1828, 1882, 2165
BseMI	GCAATG	4 cut(s)	706, 1215, 1539, 2002
BseMII	CTCAG	5 cut(s)	497, 708, 783, 1701, 2175
BseNI	ACTGG	7 cut(s)	190, 391, 688, 1223, 1497, 1632, 1813
BseXI	GCAGC	7 cut(s)	25, 371, 830, 1442, 1445, 1711, 2517
BsgI	GTGCAG	1 cut(s)	1866
Bsh1236I	CGCG	1 cut(s)	1619
BshFI	GGCC	8 cut(s)	727, 1191, 1345, 1631, 1778, 1980, 2307, 2349
BshNI	GGYRCC	2 cut(s)	952, 1068
BsiHKAI	GWGCWC	3 cut(s)	313, 1154, 1179
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	3 cut(s)	724, 761, 1633
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	9 cut(s)	185, 296, 614, 641, 674, 1341, 1828, 1882, 2165
BsmAI	GTCTC	2 cut(s)	625, 1994
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	2 cut(s)	1627, 2416
BsnI	GGCC	8 cut(s)	727, 1191, 1345, 1631, 1778, 1980, 2307, 2349
Bso31I	GGTCTC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	2 cut(s)	1969, 2380
Bsp1286I	GDGCHC	3 cut(s)	313, 1154, 1179
Bsp1407I	TGTACA	1 cut(s)	164
Bsp1720I	GCTNAGC	1 cut(s)	1710
BspACI	CCGC	2 cut(s)	1127, 1306
BspANI	GGCC	8 cut(s)	727, 1191, 1345, 1631, 1778, 1980, 2307, 2349
BspCNI	CTCAG	5 cut(s)	498, 709, 784, 1702, 2176
BspFNI	CGCG	1 cut(s)	1619
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	4 cut(s)	853, 954, 1070, 2199
BspQI	GCTCTTC	1 cut(s)	1910
BspT104I	TTCGAA	2 cut(s)	1969, 2380
BspT107I	GGYRCC	2 cut(s)	952, 1068
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	4 cut(s)	706, 1215, 1539, 2002
BsrFI	RCCGGY	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	7 cut(s)	190, 391, 688, 1223, 1497, 1632, 1813
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	6 cut(s)	22, 759, 1110, 1203, 1981, 2496
BssNAI	GTATAC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	1069
BssT1I	CCWWGG	1 cut(s)	2496
Bst1107I	GTATAC	1 cut(s)	415
Bst2UI	CCWGG	9 cut(s)	23, 306, 743, 815, 1112, 1205, 1371, 1829, 1877
Bst4CI	ACNGT	7 cut(s)	380, 401, 1000, 1198, 1440, 1677, 1985
Bst6I	CTCTTC	4 cut(s)	1053, 1319, 1910, 2334
BstACI	GRCGYC	1 cut(s)	1069
BstAUI	TGTACA	1 cut(s)	164
BstBI	TTCGAA	2 cut(s)	1969, 2380
BstC8I	GCNNGC	6 cut(s)	210, 725, 1080, 1617, 1743, 1901
BstDSI	CCRYGG	1 cut(s)	1981
BstENI	CCTNNNNNAGG	3 cut(s)	612, 672, 1826
BstF5I	GGATG	6 cut(s)	387, 769, 1057, 1301, 1570, 1872
BstFNI	CGCG	1 cut(s)	1619
BstH2I	RGCGCY	1 cut(s)	1072
BstHHI	GCGC	2 cut(s)	1071, 1995
BstMAI	GTCTC	2 cut(s)	625, 1994
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 696, 1075, 1463, 1751, 1877, 1919, 2081, 2461
BstNI	CCWGG	9 cut(s)	23, 306, 743, 815, 1112, 1205, 1371, 1829, 1877
BstNSI	RCATGY	5 cut(s)	986, 1520, 1903, 2224, 2464
BstUI	CGCG	1 cut(s)	1619
BstV1I	GCAGC	7 cut(s)	25, 371, 830, 1442, 1445, 1711, 2517
BstV2I	GAAGAC	1 cut(s)	1558
BstX2I	RGATCY	4 cut(s)	706, 1591, 1931, 2197
BstXI	CCANNNNNNTGG	2 cut(s)	742, 1581
BstYI	RGATCY	4 cut(s)	706, 1591, 1931, 2197
BstZ17I	GTATAC	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	1218
BsuRI	GGCC	8 cut(s)	727, 1191, 1345, 1631, 1778, 1980, 2307, 2349
BtgI	CCRYGG	1 cut(s)	1981
BtsCI	GGATG	6 cut(s)	387, 769, 1057, 1301, 1570, 1872
BtsI	GCAGTG	1 cut(s)	1527
BtsIMutI	CAGTG	4 cut(s)	1436, 1527, 1625, 2094
Cac8I	GCNNGC	6 cut(s)	210, 725, 1080, 1617, 1743, 1901
CaiI	CAGNNNCTG	1 cut(s)	1822
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	2 cut(s)	1071, 1995
Cfr10I	RCCGGY	1 cut(s)	723
Cfr13I	GGNCC	5 cut(s)	617, 1630, 1777, 2032, 2305
Csp6I	GTAC	8 cut(s)	54, 165, 732, 953, 1403, 2133, 2270, 2470
CspCI	CAANNNNNGTGG	2 cut(s)	1937, 1972
CviQI	GTAC	8 cut(s)	54, 165, 732, 953, 1403, 2133, 2270, 2470
DinI	GGCGCC	1 cut(s)	1070
EaeI	YGGCCR	3 cut(s)	725, 1978, 2347
Eam1104I	CTCTTC	4 cut(s)	1053, 1319, 1910, 2334
EarI	CTCTTC	4 cut(s)	1053, 1319, 1910, 2334
Ecl136II	GAGCTC	2 cut(s)	311, 1152
Eco130I	CCWWGG	1 cut(s)	2496
Eco24I	GRGCYC	2 cut(s)	313, 1154
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	617, 2032
Eco53kI	GAGCTC	2 cut(s)	311, 1152
Eco57I	CTGAAG	1 cut(s)	2070
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	2 cut(s)	311, 1152
EcoNI	CCTNNNNNAGG	3 cut(s)	612, 672, 1826
EcoO109I	RGGNCCY	1 cut(s)	2032
EcoRII	CCWGG	9 cut(s)	21, 304, 741, 813, 1110, 1203, 1369, 1827, 1875
EcoT14I	CCWWGG	1 cut(s)	2496
EcoT22I	ATGCAT	3 cut(s)	1303, 1572, 2110
EcoT38I	GRGCYC	2 cut(s)	313, 1154
EgeI	GGCGCC	1 cut(s)	1070
EheI	GGCGCC	1 cut(s)	1070
ErhI	CCWWGG	1 cut(s)	2496
FalI	AAGNNNNNCTT	2 cut(s)	2231, 2263
FaqI	GGGAC	1 cut(s)	313
FauI	CCCGC	1 cut(s)	1313
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	7 cut(s)	14, 360, 819, 1431, 1434, 1700, 2506
FokI	GGATG	6 cut(s)	374, 776, 1064, 1288, 1557, 1859
FriOI	GRGCYC	2 cut(s)	313, 1154
Fsp4HI	GCNGC	7 cut(s)	14, 360, 819, 1431, 1434, 1700, 2506
FspBI	CTAG	9 cut(s)	33, 696, 911, 1025, 1349, 1380, 1416, 1548, 1589
GlaI	GCGC	2 cut(s)	1070, 1994
GluI	GCNGC	7 cut(s)	14, 360, 819, 1431, 1434, 1700, 2506
GsuI	CTGGAG	4 cut(s)	288, 1133, 1240, 1674
HaeII	RGCGCY	1 cut(s)	1072
HaeIII	GGCC	8 cut(s)	727, 1191, 1345, 1631, 1778, 1980, 2307, 2349
HapII	CCGG	3 cut(s)	724, 761, 1633
HhaI	GCGC	2 cut(s)	1071, 1995
Hin1I	GRCGYC	1 cut(s)	1069
Hin6I	GCGC	2 cut(s)	1069, 1993
HinP1I	GCGC	2 cut(s)	1069, 1993
HindIII	AAGCTT	2 cut(s)	2043, 2423
HpaII	CCGG	3 cut(s)	724, 761, 1633
HphI	GGTGA	6 cut(s)	260, 614, 1232, 1368, 1436, 1997
Hpy166II	GTNNAC	2 cut(s)	415, 2092
Hpy188I	TCNGA	9 cut(s)	41, 153, 375, 384, 447, 793, 1936, 1963, 2290
Hpy8I	GTNNAC	2 cut(s)	415, 2092
Hpy99I	CGWCG	1 cut(s)	1289
HpyAV	CCTTC	9 cut(s)	702, 1042, 1270, 1757, 2023, 2087, 2142, 2159, 2509
HpyCH4III	ACNGT	7 cut(s)	380, 401, 1000, 1198, 1440, 1677, 1985
HpyCH4IV	ACGT	2 cut(s)	223, 1287
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 696, 1075, 1463, 1751, 1877, 1919, 2081, 2461
HpySE526I	ACGT	2 cut(s)	223, 1287
Hsp92I	GRCGYC	1 cut(s)	1069
HspAI	GCGC	2 cut(s)	1069, 1993
KasI	GGCGCC	1 cut(s)	1068
KpnI	GGTACC	1 cut(s)	956
KroI	GCCGGC	1 cut(s)	723
KroNI	GCCGGC	1 cut(s)	725
LguI	GCTCTTC	1 cut(s)	1910
LmnI	GCTCC	4 cut(s)	308, 1142, 1635, 1824
Lsp1109I	GCAGC	7 cut(s)	25, 371, 830, 1442, 1445, 1711, 2517
LweI	GCATC	8 cut(s)	868, 1310, 1557, 1579, 1909, 2078, 2407, 2442
MaeI	CTAG	9 cut(s)	33, 696, 911, 1025, 1349, 1380, 1416, 1548, 1589
MaeII	ACGT	2 cut(s)	223, 1287
MaeIII	GTNAC	2 cut(s)	401, 1885
MfeI	CAATTG	1 cut(s)	1353
MflI	RGATCY	4 cut(s)	706, 1591, 1931, 2197
MhlI	GDGCHC	3 cut(s)	313, 1154, 1179
MlsI	TGGCCA	2 cut(s)	1980, 2349
MluCI	AATT	9 cut(s)	369, 436, 570, 805, 1004, 1037, 1353, 1965, 2397
MluNI	TGGCCA	2 cut(s)	1980, 2349
Mly113I	GGCGCC	1 cut(s)	1069
MlyI	GAGTC	3 cut(s)	295, 875, 1469
Mox20I	TGGCCA	2 cut(s)	1980, 2349
Mph1103I	ATGCAT	3 cut(s)	1303, 1572, 2110
MroNI	GCCGGC	1 cut(s)	723
MroXI	GAANNNNTTC	1 cut(s)	850
MscI	TGGCCA	2 cut(s)	1980, 2349
MseI	TTAA	5 cut(s)	1089, 1470, 1647, 1764, 2427
MslI	CAYNNNNRTG	2 cut(s)	1515, 1620
Msp20I	TGGCCA	2 cut(s)	1980, 2349
MspA1I	CMGCKG	2 cut(s)	362, 1709
MspI	CCGG	3 cut(s)	724, 761, 1633
MunI	CAATTG	1 cut(s)	1353
Mva1269I	GAATGC	2 cut(s)	1627, 2416
MvaI	CCWGG	9 cut(s)	23, 306, 743, 815, 1112, 1205, 1371, 1829, 1877
MvnI	CGCG	1 cut(s)	1619
MwoI	GCNNNNNNNGC	9 cut(s)	10, 696, 1075, 1463, 1751, 1877, 1919, 2081, 2461
NaeI	GCCGGC	1 cut(s)	725
NarI	GGCGCC	1 cut(s)	1069
NciI	CCSGG	2 cut(s)	761, 1633
NgoMIV	GCCGGC	1 cut(s)	723
NlaIV	GGNNCC	4 cut(s)	853, 954, 1070, 2199
NsiI	ATGCAT	3 cut(s)	1303, 1572, 2110
NspI	RCATGY	5 cut(s)	986, 1520, 1903, 2224, 2464
NspV	TTCGAA	2 cut(s)	1969, 2380
PaeI	GCATGC	1 cut(s)	1903
PaeR7I	CTCGAG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	2220
PciSI	GCTCTTC	1 cut(s)	1910
PctI	GAATGC	2 cut(s)	1627, 2416
PdiI	GCCGGC	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	7 cut(s)	342, 1272, 1331, 1659, 1813, 2492, 2521
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	2 cut(s)	304, 1827
PkrI	GCNGC	7 cut(s)	15, 361, 820, 1432, 1435, 1701, 2507
PleI	GAGTC	3 cut(s)	295, 874, 1469
PluTI	GGCGCC	1 cut(s)	1072
PpsI	GAGTC	3 cut(s)	295, 874, 1469
PpuMI	RGGWCCY	1 cut(s)	2032
PscI	ACATGT	1 cut(s)	2220
PsiI	TTATAA	1 cut(s)	969
Psp124BI	GAGCTC	2 cut(s)	313, 1154
Psp5II	RGGWCCY	1 cut(s)	2032
Psp6I	CCWGG	9 cut(s)	21, 304, 741, 813, 1110, 1203, 1369, 1827, 1875
PspGI	CCWGG	9 cut(s)	21, 304, 741, 813, 1110, 1203, 1369, 1827, 1875
PspN4I	GGNNCC	4 cut(s)	853, 954, 1070, 2199
PspPI	GGNCC	5 cut(s)	617, 1630, 1777, 2032, 2305
PspPPI	RGGWCCY	1 cut(s)	2032
PspXI	VCTCGAGB	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	2171, 2203
PstNI	CAGNNNCTG	1 cut(s)	1822
PsuI	RGATCY	4 cut(s)	706, 1591, 1931, 2197
PvuII	CAGCTG	2 cut(s)	362, 1709
RsaI	GTAC	8 cut(s)	55, 166, 733, 954, 1404, 2134, 2271, 2471
RsaNI	GTAC	8 cut(s)	54, 165, 732, 953, 1403, 2133, 2270, 2470
RseI	CAYNNNNRTG	2 cut(s)	1515, 1620
SacI	GAGCTC	2 cut(s)	313, 1154
SapI	GCTCTTC	1 cut(s)	1910
SaqAI	TTAA	5 cut(s)	1089, 1470, 1647, 1764, 2427
SatI	GCNGC	7 cut(s)	14, 360, 819, 1431, 1434, 1700, 2506
Sau96I	GGNCC	5 cut(s)	617, 1630, 1777, 2032, 2305
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	3 cut(s)	295, 875, 1469
SduI	GDGCHC	3 cut(s)	313, 1154, 1179
SfaNI	GCATC	8 cut(s)	868, 1310, 1557, 1579, 1909, 2078, 2407, 2442
SfoI	GGCGCC	1 cut(s)	1070
Sfr274I	CTCGAG	1 cut(s)	49
SfuI	TTCGAA	2 cut(s)	1969, 2380
SinI	GGWCC	2 cut(s)	617, 2032
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	1515, 1620
SmlI	CTYRAG	6 cut(s)	49, 529, 839, 863, 1264, 1856
SmoI	CTYRAG	6 cut(s)	49, 529, 839, 863, 1264, 1856
SphI	GCATGC	1 cut(s)	1903
Sse9I	AATT	9 cut(s)	369, 436, 570, 805, 1004, 1037, 1353, 1965, 2397
SsiI	CCGC	2 cut(s)	1127, 1306
SspDI	GGCGCC	1 cut(s)	1068
SspMI	CTAG	9 cut(s)	33, 696, 911, 1025, 1349, 1380, 1416, 1548, 1589
SstI	GAGCTC	2 cut(s)	313, 1154
StyI	CCWWGG	1 cut(s)	2496
TaaI	ACNGT	7 cut(s)	380, 401, 1000, 1198, 1440, 1677, 1985
TaiI	ACGT	2 cut(s)	226, 1290
TaqI	TCGA	8 cut(s)	28, 50, 174, 396, 568, 1527, 1969, 2380
TasI	AATT	9 cut(s)	369, 436, 570, 805, 1004, 1037, 1353, 1965, 2397
TatI	WGTACW	2 cut(s)	53, 164
TfiI	GAWTC	7 cut(s)	342, 1272, 1331, 1659, 1813, 2492, 2521
Tru1I	TTAA	5 cut(s)	1089, 1470, 1647, 1764, 2427
Tru9I	TTAA	5 cut(s)	1089, 1470, 1647, 1764, 2427
TscAI	CASTG	4 cut(s)	1443, 1527, 1632, 2094
TseI	GCWGC	7 cut(s)	13, 359, 818, 1430, 1433, 1699, 2505
TspGWI	ACGGA	1 cut(s)	2041
TspRI	CASTG	4 cut(s)	1443, 1527, 1632, 2094
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	617, 2032
XagI	CCTNNNNNAGG	3 cut(s)	612, 672, 1826
XapI	RAATTY	6 cut(s)	369, 436, 570, 1004, 1037, 1965
XceI	RCATGY	5 cut(s)	986, 1520, 1903, 2224, 2464
XhoI	CTCGAG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	850
XspI	CTAG	9 cut(s)	33, 696, 911, 1025, 1349, 1380, 1416, 1548, 1589
ZrmI	AGTACT	1 cut(s)	55
Zsp2I	ATGCAT	3 cut(s)	1303, 1572, 2110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.