RLG00000011475
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008158
Physical Location & Seq
Reverse (-)
9763435 .. 9763949
515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011475

Sequence Viewer

Length: 351 bp
ATGGATGAGCCAACCTCTGGTCTTGATGCCAGGGCTGCAGCAATTGTAATGAGAATAGTAAGGAATACAGTGAACACCGGGAGAACTGTAGTCTGCACCATCCACCAGCCAAGCATTGATATATTTGATGGTTTTGATGAGATGCTACTTTTGAAATGGGGAGAAGAAGAAATATATGTTGGTCCTTTAGGCCACCAGTCCTCTCAGTTGATTGAATACTTTGAGGGGATCAGTGGAGTTCCAAAAATGAAGGATGGTTACAATCCTGCAACTTGGATGTTAGAGGTTACTTCTGCAGCACAAGAAGCAACTCTAGGGGTCAATTTCACCGACATATACAAGAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

117

Amino Acids

12.81

Weight (kDa)

4.51

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 17
AclWI GGATC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 154, 215
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 35, 38, 296
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BbvI GCAGC 3 cut(s) 22, 50, 308
BccI CCATC 3 cut(s) 107, 122, 248
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 3 cut(s) 36, 87, 294
BisI GCNGC 3 cut(s) 36, 39, 297
BlsI GCNGC 3 cut(s) 37, 40, 298
Bme1390I CCNGG 2 cut(s) 31, 79
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 31, 79
BmsI GCATC 2 cut(s) 16, 132
BplI GAGNNNNNCTC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 4 cut(s) 10, 99, 259, 282
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 22, 50, 308
BsgI GTGCAG 1 cut(s) 79
BshFI GGCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 17
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 228
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 217
BspMAI CTGCAG 2 cut(s) 40, 298
BspPI GGATC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 70, 88
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 4 cut(s) 10, 99, 259, 282
BstKTI GATC 1 cut(s) 231
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 2 cut(s) 35, 305
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 77
BstSFI CTRYAG 3 cut(s) 36, 87, 294
BstV1I GCAGC 3 cut(s) 22, 50, 308
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 4 cut(s) 10, 99, 259, 282
BtsIMutI CAGTG 2 cut(s) 75, 238
Cfr13I GGNCC 1 cut(s) 182
CviJI RGCY 4 cut(s) 10, 35, 109, 192
CviKI_1 RGCY 4 cut(s) 10, 35, 109, 192
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 29
FaiI YATR 6 cut(s) 122, 175, 177, 335, 337, 349
Fnu4HI GCNGC 3 cut(s) 36, 39, 297
FokI GGATG 4 cut(s) 17, 86, 266, 289
Fsp4HI GCNGC 3 cut(s) 36, 39, 297
FspBI CTAG 1 cut(s) 314
GluI GCNGC 3 cut(s) 36, 39, 297
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 78
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 70, 88
HpyCH4V TGCA 4 cut(s) 38, 96, 269, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 305
HpyF3I CTNAG 1 cut(s) 204
Kzo9I GATC 1 cut(s) 228
LpnPI CCDG 7 cut(s) 3, 16, 43, 91, 119, 209, 279
Lsp1109I GCAGC 3 cut(s) 22, 50, 308
LweI GCATC 2 cut(s) 16, 132
MaeI CTAG 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 257, 286
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 2 cut(s) 176, 179
MfeI CAATTG 1 cut(s) 42
MluCI AATT 2 cut(s) 42, 322
MnlI CCTC 4 cut(s) 25, 211, 217, 277
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 31, 79
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 35, 305
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 3 cut(s) 37, 40, 298
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 2 cut(s) 40, 298
SatI GCNGC 3 cut(s) 36, 39, 297
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 31, 79
SetI ASST 2 cut(s) 17, 288
SfaNI GCATC 2 cut(s) 16, 132
SfcI CTRYAG 3 cut(s) 36, 87, 294
SinI GGWCC 1 cut(s) 182
Sse9I AATT 2 cut(s) 42, 322
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 29, 77
TaaI ACNGT 2 cut(s) 70, 88
TasI AATT 2 cut(s) 42, 322
TscAI CASTG 2 cut(s) 75, 238
TseI GCWGC 3 cut(s) 35, 38, 296
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 2 cut(s) 75, 238
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.