Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Forward (+)

56395257 .. 56397677

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGATGTGTTTGAGAAAATCTAAAAATGGAATACTGTTTTTGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCAGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCGTAAGTAGTCATTCCCAGCTTGCAACTGTATTGCGGAACTCCTCAAAGCTTGTGAGTTCACTTATTTGTGCTCTGGCTGCATTTGGATTAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCATGGTGGCAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGCGCTCTTTCTGTCAATGAATTTACTGCTGTAAGGTGGATCAAGATAGCTCCTTTAACAAACAGAACAATTGGGCAAAATGTCCTCCAAGAACACAACATACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTGGTTTGTTAGCTTATGCATTGCTTTTCAATTGCAGAGTGACTCTGGCCTTGACGTACCTAAATCCACTAAGGAAGTACCAGACAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTAGAGTTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGCTGGTAGGAAAACTGGTGGATACATAGAAGGAGATATTAAGATATCTGGTTACCTGAGAGAGCAACATACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTTCTTCTGCTCTTCGCTTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTTGAAGAAGTAATGGAACTAGTAGAGCTTGATACTCTAAGGCATGCTTTGGTTGGTGTGCCAGGCAGTTCAGGCTTATCAACAGAGCAAAGAAAACGCTTAACAATCGCTGTTGAGCTTGTTGCGAACCCGTCAATTATCTTTATGGATGAACCCACATCTGGACTGGACGCAAGGGCAGCAGCCATTGTGATGAGGACTGTTCGTAATACTGTTGATACAGGAAGAACGGTGGTCTGCACTATACACCAACCAAGTATCGACATTTTTGAGGCATTTGACGAGGTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

464

Amino Acids

51.15

Weight (kDa)

8.97

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	15 - 69	4.9e-18	La domain
ABC2_membrane	PF01061	82 - 130	3.5e-12	ABC-2 type transporter
PDR_assoc	PF08370	135 - 197	2.4e-22	Plant PDR ABC transporter associated
ABC_tran	PF00005	269 - 421	3.3e-21	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	894
AccBSI	CCGCTC	1 cut(s)	819
AccI	GTMKAC	1 cut(s)	781
AccII	CGCG	1 cut(s)	369
AciI	CCGC	2 cut(s)	202, 819
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	891
AfaI	GTAC	3 cut(s)	560, 581, 1389
AfiI	CCNNNNNNNGG	3 cut(s)	688, 689, 1262
AgsI	TTSAA	3 cut(s)	151, 532, 1106
AhlI	ACTAGT	1 cut(s)	1120
AjnI	CCWGG	2 cut(s)	832, 1162
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	1079
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	3 cut(s)	162, 333, 549
ApeKI	GCWGC	5 cut(s)	245, 260, 623, 1280, 1283
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	163, 333
AsuHPI	GGTGA	3 cut(s)	339, 488, 822
BauI	CACGAG	1 cut(s)	1094
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	5 cut(s)	232, 247, 610, 1292, 1295
BccI	CCATC	2 cut(s)	623, 880
BciT130I	CCWGG	2 cut(s)	834, 1164
BciVI	GTATCC	1 cut(s)	911
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	1079
BcuI	ACTAGT	1 cut(s)	1120
BfaI	CTAG	5 cut(s)	654, 669, 861, 975, 1121
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	911
BglI	GCCNNNNNGGC	1 cut(s)	325
BisI	GCNGC	5 cut(s)	246, 261, 624, 1281, 1284
BlsI	GCNGC	5 cut(s)	247, 262, 625, 1282, 1285
Bme1390I	CCNGG	2 cut(s)	834, 1164
BmgT120I	GGNCC	2 cut(s)	163, 333
BmrFI	CCNGG	2 cut(s)	834, 1164
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	1002
BsaHI	GRCGYC	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	3 cut(s)	688, 689, 1262
Bse1I	ACTGG	3 cut(s)	683, 916, 1272
Bse3DI	GCAATG	2 cut(s)	335, 521
BseBI	CCWGG	2 cut(s)	834, 1164
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	1255
BseLI	CCNNNNNNNGG	3 cut(s)	688, 689, 1262
BseMI	GCAATG	2 cut(s)	335, 521
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	3 cut(s)	683, 916, 1272
BseRI	GAGGAG	3 cut(s)	199, 1005, 1046
BseXI	GCAGC	5 cut(s)	232, 247, 610, 1292, 1295
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	1324
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	164, 335, 551
BsiHKAI	GWGCWC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	688, 689, 1262
BsmAI	GTCTC	1 cut(s)	1079
BsnI	GGCC	3 cut(s)	164, 335, 551
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	61, 82, 405, 696
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	202, 819
BspANI	GGCC	3 cut(s)	164, 335, 551
BspCNI	CTCAG	1 cut(s)	945
BspFNI	CGCG	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	1062
BsrBI	CCGCTC	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	335, 521
BsrI	ACTGG	3 cut(s)	683, 916, 1272
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	4 cut(s)	61, 82, 405, 696
BssNAI	GTATAC	1 cut(s)	782
BssNI	GRCGYC	1 cut(s)	891
BssSI	CACGAG	1 cut(s)	1094
BssT1I	CCWWGG	1 cut(s)	320
Bst1107I	GTATAC	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	1094
Bst2UI	CCWGG	2 cut(s)	834, 1164
Bst4CI	ACNGT	8 cut(s)	36, 196, 589, 649, 1027, 1303, 1315, 1333
Bst6I	CTCTTC	1 cut(s)	1062
BstACI	GRCGYC	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	189, 1146
BstDEI	CTNAG	4 cut(s)	70, 572, 953, 1139
BstDSI	CCRYGG	1 cut(s)	320
BstEII	GGTNACC	1 cut(s)	947
BstF5I	GGATG	1 cut(s)	1255
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	64, 85, 408, 699
BstMAI	GTCTC	1 cut(s)	1079
BstMBI	GATC	4 cut(s)	61, 82, 405, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 325, 980, 1173, 1280
BstNI	CCWGG	2 cut(s)	834, 1164
BstNSI	RCATGY	1 cut(s)	1148
BstPI	GGTNACC	1 cut(s)	947
BstSCI	CCNGG	2 cut(s)	832, 1162
BstSFI	CTRYAG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	5 cut(s)	232, 247, 610, 1292, 1295
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstZ17I	GTATAC	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	911
BsuRI	GGCC	3 cut(s)	164, 335, 551
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	1255
BtsIMutI	CAGTG	2 cut(s)	64, 594
Cac8I	GCNNGC	2 cut(s)	189, 1146
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	163, 333
CseI	GACGC	1 cut(s)	1280
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	3 cut(s)	559, 580, 1388
CviAII	CATG	2 cut(s)	321, 1145
CviQI	GTAC	3 cut(s)	559, 580, 1388
DdeI	CTNAG	4 cut(s)	70, 572, 953, 1139
DpnI	GATC	4 cut(s)	63, 84, 407, 698
DpnII	GATC	4 cut(s)	61, 82, 405, 696
Eam1104I	CTCTTC	1 cut(s)	1062
EarI	CTCTTC	1 cut(s)	1062
Eco130I	CCWWGG	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	942
Eco91I	GGTNACC	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	832, 1162
EcoRV	GATATC	1 cut(s)	942
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	324, 1148
FalI	AAGNNNNNCTT	2 cut(s)	1132, 1164
FatI	CATG	2 cut(s)	320, 1144
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	781
Fnu4HI	GCNGC	5 cut(s)	246, 261, 624, 1281, 1284
FokI	GGATG	1 cut(s)	1262
Fsp4HI	GCNGC	5 cut(s)	246, 261, 624, 1281, 1284
FspBI	CTAG	5 cut(s)	654, 669, 861, 975, 1121
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	5 cut(s)	246, 261, 624, 1281, 1284
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	164, 335, 551
HgaI	GACGC	1 cut(s)	1280
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	891
Hin1II	CATG	2 cut(s)	324, 1148
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	6 cut(s)	291, 544, 616, 788, 1036, 1092
HpaI	GTTAAC	1 cut(s)	676
HphI	GGTGA	3 cut(s)	339, 488, 822
Hpy166II	GTNNAC	4 cut(s)	227, 676, 751, 782
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	151, 409, 1263
Hpy8I	GTNNAC	4 cut(s)	227, 676, 751, 782
HpyAV	CCTTC	3 cut(s)	110, 605, 920
HpyCH4III	ACNGT	8 cut(s)	36, 196, 589, 649, 1027, 1303, 1315, 1333
HpyCH4IV	ACGT	3 cut(s)	557, 891, 1390
HpyCH4V	TGCA	9 cut(s)	143, 191, 248, 263, 521, 537, 626, 799, 1341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 325, 980, 1173, 1280
HpyF3I	CTNAG	4 cut(s)	70, 572, 953, 1139
HpySE526I	ACGT	3 cut(s)	557, 891, 1390
Hsp92I	GRCGYC	1 cut(s)	891
Hsp92II	CATG	2 cut(s)	324, 1148
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	4 cut(s)	61, 82, 405, 696
LguI	GCTCTTC	1 cut(s)	1062
LmnI	GCTCC	2 cut(s)	421, 866
Lsp1109I	GCAGC	5 cut(s)	232, 247, 610, 1292, 1295
LweI	GCATC	1 cut(s)	152
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	5 cut(s)	654, 669, 861, 975, 1121
MaeII	ACGT	3 cut(s)	557, 891, 1390
MaeIII	GTNAC	5 cut(s)	541, 736, 771, 947, 1021
MalI	GATC	4 cut(s)	63, 84, 407, 698
MbiI	CCGCTC	1 cut(s)	819
MboI	GATC	4 cut(s)	61, 82, 405, 696
MboII	GAAGA	5 cut(s)	166, 1041, 1049, 1118, 1338
MfeI	CAATTG	2 cut(s)	435, 532
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	5 cut(s)	386, 435, 532, 662, 1236
MlyI	GAGTC	4 cut(s)	538, 625, 1045, 1086
MnlI	CCTC	9 cut(s)	87, 176, 220, 461, 1024, 1026, 1290, 1366, 1378
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	7 cut(s)	159, 315, 422, 675, 716, 936, 1202
MslI	CAYNNNNRTG	2 cut(s)	884, 1292
MspR9I	CCNGG	2 cut(s)	834, 1164
MunI	CAATTG	2 cut(s)	435, 532
MvaI	CCWGG	2 cut(s)	834, 1164
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	245, 325, 980, 1173, 1280
NcoI	CCATGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	61, 82, 405, 696
NlaIII	CATG	2 cut(s)	324, 1148
NmuCI	GTSAC	2 cut(s)	541, 771
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	1148
PaeI	GCATGC	1 cut(s)	1148
PciSI	GCTCTTC	1 cut(s)	1062
PfeI	GAWTC	2 cut(s)	291, 788
PflFI	GACNNNGTC	1 cut(s)	649
PkrI	GCNGC	5 cut(s)	247, 262, 625, 1282, 1285
PleI	GAGTC	4 cut(s)	538, 624, 1044, 1086
PpsI	GAGTC	4 cut(s)	538, 624, 1044, 1086
Psp6I	CCWGG	2 cut(s)	832, 1162
PspEI	GGTNACC	1 cut(s)	947
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	2 cut(s)	832, 1162
PspPI	GGNCC	2 cut(s)	163, 333
PsrI	GAACNNNNNNTAC	2 cut(s)	450, 482
PstI	CTGCAG	1 cut(s)	628
PsyI	GACNNNGTC	1 cut(s)	649
RsaI	GTAC	3 cut(s)	560, 581, 1389
RsaNI	GTAC	3 cut(s)	559, 580, 1388
RseI	CAYNNNNRTG	2 cut(s)	884, 1292
SapI	GCTCTTC	1 cut(s)	1062
SaqAI	TTAA	7 cut(s)	159, 315, 422, 675, 716, 936, 1202
SatI	GCNGC	5 cut(s)	246, 261, 624, 1281, 1284
Sau3AI	GATC	4 cut(s)	61, 82, 405, 696
Sau96I	GGNCC	2 cut(s)	163, 333
SchI	GAGTC	4 cut(s)	538, 625, 1045, 1086
ScrFI	CCNGG	2 cut(s)	834, 1164
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	2 cut(s)	884, 1292
SmlI	CTYRAG	1 cut(s)	1017
SmoI	CTYRAG	1 cut(s)	1017
SpeI	ACTAGT	1 cut(s)	1120
SphI	GCATGC	1 cut(s)	1148
Sse9I	AATT	5 cut(s)	386, 435, 532, 662, 1236
SsiI	CCGC	2 cut(s)	202, 819
SspMI	CTAG	5 cut(s)	654, 669, 861, 975, 1121
StyD4I	CCNGG	2 cut(s)	832, 1162
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	8 cut(s)	36, 196, 589, 649, 1027, 1303, 1315, 1333
TaiI	ACGT	3 cut(s)	560, 894, 1393
TaqI	TCGA	3 cut(s)	791, 809, 1362
TasI	AATT	5 cut(s)	386, 435, 532, 662, 1236
TfiI	GAWTC	2 cut(s)	291, 788
Tru1I	TTAA	7 cut(s)	159, 315, 422, 675, 716, 936, 1202
Tru9I	TTAA	7 cut(s)	159, 315, 422, 675, 716, 936, 1202
TscAI	CASTG	2 cut(s)	64, 594
TseFI	GTSAC	2 cut(s)	541, 771
TseI	GCWGC	5 cut(s)	245, 260, 623, 1280, 1283
Tsp45I	GTSAC	2 cut(s)	541, 771
TspDTI	ATGAA	4 cut(s)	88, 399, 782, 1266
TspRI	CASTG	2 cut(s)	64, 594
Tth111I	GACNNNGTC	1 cut(s)	649
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	1148
XcmI	CCANNNNNNNNNTGG	2 cut(s)	327, 1264
XmiI	GTMKAC	1 cut(s)	781
XspI	CTAG	5 cut(s)	654, 669, 861, 975, 1121
ZraI	GACGTC	1 cut(s)	892
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.