Rmu_co8331051.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8331051.1
OG0008158
Physical Location & Seq
Reverse (-)
1 .. 899
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8331051.1_g000001.1.cds

Sequence Viewer

Length: 621 bp
atgaagagtcaaggagttgatcaagatcgccttcagctcctacgagatgtcagtggtgcttttagaccaggagtattgacagcacttgtaggtgttagtggtgctggaaaaacaactcttatggacgtcttggcaggaagaaagacaggtggttatattgaaggaagtattaacatctccggttatccaaagaaacaagaaacatttgctcgtgttagtggttattgtgagcagaatgacatccattcaccacatgttactgtatacgaatctcttctgtattcagcctggctccgtctttcttcaaatgtaaagacccgaacaagaaagatgtttgttgaggaagtcatggagttggttgagcttaatcccattagagatgctctagttggccttccgggaatagatggtctttcaacagaacaaaggaagagactaaccatagccgtggagctggtagccaacccctctattattttcatggatgaaccaacatctggacttgatgccagggctgctgccatcgttatgcgtactgtgagaaacacagtggacactggaagaactgttgtctgcacgattcatcagccaagcatagatatttttgaagcttttgatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

207

Amino Acids

22.69

Weight (kDa)

5.97

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 497
AccI GTMKAC 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 161, 306, 417, 608
AjnI CCWGG 3 cut(s) 67, 287, 509
AluBI AGCT 4 cut(s) 37, 364, 454, 611
AluI AGCT 4 cut(s) 37, 364, 454, 611
Alw26I GTCTC 1 cut(s) 427
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 515, 518
Asp700I GAANNNNTTC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 240
BauI CACGAG 1 cut(s) 210
BbvI GCAGC 2 cut(s) 502, 505
BccI CCATC 2 cut(s) 401, 530
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 3 cut(s) 69, 289, 511
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 516, 519
BlsI GCNGC 2 cut(s) 517, 520
Bme1390I CCNGG 4 cut(s) 69, 289, 399, 511
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 4 cut(s) 69, 289, 399, 511
BmsI GCATC 2 cut(s) 370, 496
BpuMI CCSGG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 447, 510
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 562
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 3 cut(s) 69, 289, 511
BseDI CCNNGG 2 cut(s) 447, 510
BseGI GGATG 2 cut(s) 240, 490
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 502, 505
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 180, 398
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 427
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 19, 25
BspANI GGCC 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 447, 510
BssMI GATC 2 cut(s) 19, 25
BssNAI GTATAC 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 210
Bst1107I GTATAC 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 69, 289, 511
Bst4CI ACNGT 4 cut(s) 262, 538, 550, 568
Bst6I CTCTTC 2 cut(s) 279, 425
BstACI GRCGYC 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 240, 490
BstKTI GATC 2 cut(s) 22, 28
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 2 cut(s) 19, 25
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 3 cut(s) 69, 289, 511
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 4 cut(s) 67, 287, 397, 509
BstV1I GCAGC 2 cut(s) 502, 505
BstXI CCANNNNNNTGG 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 2 cut(s) 240, 490
BtsIMutI CAGTG 3 cut(s) 58, 555, 555
Csp6I GTAC 1 cut(s) 534
CviAII CATG 3 cut(s) 254, 349, 481
CviQI GTAC 1 cut(s) 534
DpnI GATC 2 cut(s) 21, 27
DpnII GATC 2 cut(s) 19, 25
Eam1104I CTCTTC 2 cut(s) 279, 425
EarI CTCTTC 2 cut(s) 279, 425
Eco57I CTGAAG 1 cut(s) 17
EcoRII CCWGG 3 cut(s) 67, 287, 509
FaeI CATG 3 cut(s) 257, 352, 484
FaiI YATR 9 cut(s) 122, 156, 255, 265, 350, 443, 482, 530, 596
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 3 cut(s) 253, 348, 480
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 516, 519
FokI GGATG 2 cut(s) 227, 497
Fsp4HI GCNGC 2 cut(s) 516, 519
FspBI CTAG 1 cut(s) 386
GluI GCNGC 2 cut(s) 516, 519
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 180, 398
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 257, 352, 484
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 3 cut(s) 7, 269, 580
HpaII CCGG 2 cut(s) 180, 398
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 265, 553
Hpy188III TCNNGA 2 cut(s) 23, 498
Hpy8I GTNNAC 2 cut(s) 265, 553
HpyAV CCTTC 3 cut(s) 41, 155, 404
HpyCH4III ACNGT 4 cut(s) 262, 538, 550, 568
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 257, 352, 484
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 25
LmnI GCTCC 3 cut(s) 42, 297, 451
Lsp1109I GCAGC 2 cut(s) 502, 505
LweI GCATC 2 cut(s) 370, 496
MaeI CTAG 1 cut(s) 386
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 21, 27
MboI GATC 2 cut(s) 19, 25
MboII GAAGA 6 cut(s) 16, 150, 266, 294, 442, 573
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 2 cut(s) 334, 478
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 2 cut(s) 171, 366
MslI CAYNNNNRTG 2 cut(s) 446, 527
MspI CCGG 2 cut(s) 180, 398
MspR9I CCNGG 4 cut(s) 69, 289, 399, 511
MvaI CCWGG 3 cut(s) 69, 289, 511
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 399
NdeII GATC 2 cut(s) 19, 25
NlaIII CATG 3 cut(s) 257, 352, 484
NlaIV GGNNCC 1 cut(s) 293
NspI RCATGY 1 cut(s) 257
PciI ACATGT 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 269, 580
PflMI CCANNNNNTGG 1 cut(s) 497
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 2 cut(s) 517, 520
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PscI ACATGT 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 67, 287, 509
PspGI CCWGG 3 cut(s) 67, 287, 509
PspN4I GGNNCC 1 cut(s) 293
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 2 cut(s) 446, 527
SaqAI TTAA 2 cut(s) 171, 366
SatI GCNGC 2 cut(s) 516, 519
Sau3AI GATC 2 cut(s) 19, 25
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 4 cut(s) 69, 289, 399, 511
SetI ASST 7 cut(s) 39, 94, 129, 151, 366, 456, 613
SfaNI GCATC 2 cut(s) 370, 496
SmiMI CAYNNNNRTG 2 cut(s) 446, 527
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 4 cut(s) 67, 287, 397, 509
TaaI ACNGT 4 cut(s) 262, 538, 550, 568
TaiI ACGT 1 cut(s) 129
TfiI GAWTC 2 cut(s) 269, 580
Tru1I TTAA 2 cut(s) 171, 366
Tru9I TTAA 2 cut(s) 171, 366
TscAI CASTG 3 cut(s) 58, 555, 562
TseI GCWGC 2 cut(s) 515, 518
TspDTI ATGAA 4 cut(s) 17, 469, 501, 572
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 3 cut(s) 58, 555, 562
Van91I CCANNNNNTGG 1 cut(s) 497
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 386
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.