Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008158

Physical Location & Seq

Genomic Coordinates Reverse (-)

60513580 .. 60517322

Gene Structure 3743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG359500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATGTTCAATGGGCATTCCGAGCTACCTCTTATGATATCTCAGCTCCCAGTCTTTTACAAGCAAAGGGATAATTACTTTCATCCTGCGTGGGCATGGTCTAGTGTTAATTTGCTTCTGCGCATACCTTACTCTATTATTGAAGCTGTCGTATGGTCTTGTGTCGTATACTACACAGTTGGTTTTGCCCCTGGTGCTGGGAAATTTTTCTGTTTCATGTTTTTGCTATTTTCTGTGCACCAAATGGCTTTGGGTCTCTTCCGGACAGTGGCATCTCTTGCAAGAGATATGGTCATTGCCAATACATTTGGATCAGCTGCATTACTTGTTATATTTTTGTTGGGTGGATTCGTTATTCCCAAAGATAGCATTAAGCCACGGTGGCAATGGGCCTTTTGGGTATCACCACTATCATATGGACAACGTGCTCTTTCTGTCAATGAATTTATTGCTGTAAGGTGGATCAAGATAGCTCTTTTAACAAACAGAACAATTAGGCAAAATGTCCTCCAAGAACACAACATACCAAATGGTGATTATTGGTATTGGATTGGAGTTGGTCGTTTGTTAGCTTATGCATTGCTTTTCAATTGCACAGTGACTCTGGCCTTGACGTACCTAAATCCACTGAGGAAGTACCAGATAGTGCTTCCACTTGATGACACAGAAGGGAGTCCTGCTGCAGATGGGGGTAAAAATAAGACTGTGTCTAGCCCAAAATTAGCTGGAGTTAACAGCCCAGTAAAGGGAATGATCTTACCATTTCAGCCATTAACAATGACTTTCCACAATGTTACCTACTCTGTTCACAAGCCAAAGGAGATGAAGTCACAAGGTATACCAGAATCGAAGTTGCAACTCTTGTCGAATGTGAGCGGAGTATTCTCACCAGGTATTCTTACAGCTTTAGTTGGGTCTAGTGGAGCTGGAAAGACCACTTTGATGGACGTCCTTGTTGGTAGGAAAACTGGTGGATACATAGAACGAGATATTAAGATATCTGGTTACCCGAGAGAGCAACGTACTTTTGCTAGAGTAGCAGGATATGTTGAGCAAAATGACATACATTCTCCTCAAGTTACAGTTGAGGAGAGTCTATGGTTTCTTCTACTCTTCACCTTCCAAAGGAAGTCAGCACAGAGACAAGACTCGTGTTTGTCGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

389

Amino Acids

43.65

Weight (kDa)

9.64

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	1 - 149	7.5e-37	ABC-2 type transporter
PDR_assoc	PF08370	161 - 216	3.5e-20	Plant PDR ABC transporter associated
ABC_tran	PF00005	288 - 380	1.3e-10	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008158)

Species	Orthologous Gene IDs
malus_domestica	MD05G1187400.v1.1 MD09G1203700.v1.1
pyrus_communis	pycom13g12320 pycom14g01630 pycom16g12200
rosa_chinensis	RchiOBHm_Chr6g0298881
rosa_laevigata	RLG00000011475 RLG00000014072
rosa_multiflora	Rmu_co8331051.1_g000001 Rmu_sc0000659.1_g000040 Rmu_sc0013739.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104880 Rroxscaffold_3G00252950
rosa_rugosa	Rorug05G0454800 Rorug06G0261800
rosa_samantha	Rh2AG299200 Rh2DG322900 Rh2DG410500 Rh4AG251100 Rh4BG256100 Rh4DG130400 Rh4DG388400 Rh5AG359500
rosa_wichuraiana	Rw2G034240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	951
Acc16I	TGCGCA	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	876
AccI	GTMKAC	2 cut(s)	168, 838
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	1 cut(s)	876
AclWI	GGATC	2 cut(s)	319, 470
AcsI	RAATTY	2 cut(s)	203, 443
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	3 cut(s)	617, 638, 1024
AfiI	CCNNNNNNNGG	5 cut(s)	197, 268, 745, 746, 1125
AgsI	TTSAA	3 cut(s)	10, 143, 589
AjnI	CCWGG	2 cut(s)	190, 889
AluBI	AGCT	9 cut(s)	25, 46, 146, 317, 473, 572, 725, 905, 926
AluI	AGCT	9 cut(s)	25, 46, 146, 317, 473, 572, 725, 905, 926
Alw21I	GWGCWC	2 cut(s)	240, 430
Alw26I	GTCTC	2 cut(s)	260, 1135
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	319, 470
Ama87I	CYCGRG	1 cut(s)	1009
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	2 cut(s)	390, 606
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	317, 680
ApoI	RAATTY	2 cut(s)	203, 443
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	396, 545, 879, 1108
AvaI	CYCGRG	1 cut(s)	1009
BaeGI	GKGCMC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	1150
Bbv12I	GWGCWC	2 cut(s)	240, 430
BbvI	GCAGC	2 cut(s)	304, 667
BccI	CCATC	2 cut(s)	680, 937
BciT130I	CCWGG	2 cut(s)	192, 891
BciVI	GTATCC	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	260, 1135
BfaI	CTAG	4 cut(s)	102, 711, 918, 1032
BfmI	CTRYAG	1 cut(s)	681
BfuI	GTATCC	1 cut(s)	968
BglI	GCCNNNNNGGC	1 cut(s)	382
BisI	GCNGC	2 cut(s)	318, 681
BlsI	GCNGC	2 cut(s)	319, 682
Bme1390I	CCNGG	2 cut(s)	192, 891
BmeT110I	CYCGRG	1 cut(s)	1009
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	192, 891
BmrI	ACTGGG	2 cut(s)	44, 734
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	2 cut(s)	44, 734
BpmI	CTGGAG	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	1059
BsaHI	GRCGYC	1 cut(s)	948
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	190, 377
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	812, 842
Bsc4I	CCNNNNNNNGG	5 cut(s)	197, 268, 745, 746, 1125
Bse1I	ACTGG	3 cut(s)	50, 740, 973
Bse3DI	GCAATG	3 cut(s)	294, 392, 578
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	192, 891
BseDI	CCNNGG	2 cut(s)	190, 377
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	5 cut(s)	197, 268, 745, 746, 1125
BseMI	GCAATG	3 cut(s)	294, 392, 578
BseMII	CTCAG	2 cut(s)	56, 620
BseNI	ACTGG	3 cut(s)	50, 740, 973
BseRI	GAGGAG	2 cut(s)	1062, 1103
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	304, 667
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	2 cut(s)	392, 608
BsiHKAI	GWGCWC	2 cut(s)	240, 430
BsiHKCI	CYCGRG	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	5 cut(s)	197, 268, 745, 746, 1125
BsmAI	GTCTC	2 cut(s)	260, 1135
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	392, 608
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	1009
Bsp1286I	GDGCHC	2 cut(s)	240, 430
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	311, 462, 753
BspACI	CCGC	1 cut(s)	876
BspANI	GGCC	2 cut(s)	392, 608
BspCNI	CTCAG	2 cut(s)	55, 621
BspEI	TCCGGA	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	2 cut(s)	319, 470
BspTNI	GGTCTC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	876
BsrDI	GCAATG	3 cut(s)	294, 392, 578
BsrI	ACTGG	3 cut(s)	50, 740, 973
BssECI	CCNNGG	2 cut(s)	190, 377
BssMI	GATC	3 cut(s)	311, 462, 753
BssNAI	GTATAC	2 cut(s)	169, 839
BssNI	GRCGYC	1 cut(s)	948
BssSI	CACGAG	1 cut(s)	1150
Bst1107I	GTATAC	2 cut(s)	169, 839
Bst2BI	CACGAG	1 cut(s)	1150
Bst2UI	CCWGG	2 cut(s)	192, 891
Bst4CI	ACNGT	6 cut(s)	178, 268, 381, 598, 706, 1084
Bst6I	CTCTTC	2 cut(s)	263, 1118
BstACI	GRCGYC	1 cut(s)	948
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	42, 629
BstDSI	CCRYGG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	1004
BstENI	CCTNNNNNAGG	1 cut(s)	1123
BstF5I	GGATG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	314, 465, 756
BstMAI	GTCTC	2 cut(s)	260, 1135
BstMBI	GATC	3 cut(s)	311, 462, 753
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 194, 278, 382, 1037
BstNI	CCWGG	2 cut(s)	192, 891
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	2 cut(s)	190, 889
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	304, 667
BstXI	CCANNNNNNTGG	1 cut(s)	943
BstZ17I	GTATAC	2 cut(s)	169, 839
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	2 cut(s)	392, 608
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	273, 603, 626
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	390
CsiI	ACCWGGT	1 cut(s)	889
Csp6I	GTAC	3 cut(s)	616, 637, 1023
CviAII	CATG	2 cut(s)	96, 217
CviQI	GTAC	3 cut(s)	616, 637, 1023
DdeI	CTNAG	2 cut(s)	42, 629
DpnI	GATC	3 cut(s)	313, 464, 755
DpnII	GATC	3 cut(s)	311, 462, 753
Eam1104I	CTCTTC	2 cut(s)	263, 1118
EarI	CTCTTC	2 cut(s)	263, 1118
Eco31I	GGTCTC	1 cut(s)	260
Eco32I	GATATC	2 cut(s)	39, 999
Eco88I	CYCGRG	1 cut(s)	1009
Eco91I	GGTNACC	1 cut(s)	1004
EcoNI	CCTNNNNNAGG	1 cut(s)	1123
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRII	CCWGG	2 cut(s)	190, 889
EcoRV	GATATC	2 cut(s)	39, 999
EcoT22I	ATGCAT	1 cut(s)	580
FaeI	CATG	2 cut(s)	99, 220
FatI	CATG	2 cut(s)	95, 216
FauNDI	CATATG	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	168, 838
Fnu4HI	GCNGC	2 cut(s)	318, 681
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	318, 681
FspBI	CTAG	4 cut(s)	102, 711, 918, 1032
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	318, 681
GsaI	CCCAGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	392, 608
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	948
Hin1II	CATG	2 cut(s)	99, 220
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	6 cut(s)	348, 601, 673, 845, 1093, 1148
HpaI	GTTAAC	1 cut(s)	733
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	4 cut(s)	396, 545, 879, 1108
Hpy166II	GTNNAC	5 cut(s)	169, 238, 733, 808, 839
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	262, 466
Hpy8I	GTNNAC	5 cut(s)	169, 238, 733, 808, 839
HpyAV	CCTTC	2 cut(s)	662, 1129
HpyCH4III	ACNGT	6 cut(s)	178, 268, 381, 598, 706, 1084
HpyCH4IV	ACGT	4 cut(s)	424, 614, 948, 1021
HpyCH4V	TGCA	7 cut(s)	238, 281, 320, 578, 594, 683, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 194, 278, 382, 1037
HpyF3I	CTNAG	2 cut(s)	42, 629
HpySE526I	ACGT	4 cut(s)	424, 614, 948, 1021
Hsp92I	GRCGYC	1 cut(s)	948
Hsp92II	CATG	2 cut(s)	99, 220
HspAI	GCGC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	311, 462, 753
LmnI	GCTCC	2 cut(s)	51, 923
Lsp1109I	GCAGC	2 cut(s)	304, 667
LweI	GCATC	1 cut(s)	281
MabI	ACCWGGT	1 cut(s)	889
MaeI	CTAG	4 cut(s)	102, 711, 918, 1032
MaeII	ACGT	4 cut(s)	424, 614, 948, 1021
MaeIII	GTNAC	5 cut(s)	598, 793, 828, 1004, 1078
MalI	GATC	3 cut(s)	313, 464, 755
MbiI	CCGCTC	1 cut(s)	876
MboI	GATC	3 cut(s)	311, 462, 753
MboII	GAAGA	3 cut(s)	250, 1097, 1105
MfeI	CAATTG	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	240, 430
MluCI	AATT	7 cut(s)	73, 109, 203, 443, 492, 589, 719
MlyI	GAGTC	4 cut(s)	595, 682, 1102, 1142
MnlI	CCTC	5 cut(s)	39, 518, 624, 1081, 1083
Mph1103I	ATGCAT	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	6 cut(s)	108, 372, 479, 732, 773, 993
MslI	CAYNNNNRTG	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	192, 891
MunI	CAATTG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	2 cut(s)	192, 891
MwoI	GCNNNNNNNGC	5 cut(s)	22, 194, 278, 382, 1037
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	3 cut(s)	311, 462, 753
NlaIII	CATG	2 cut(s)	99, 220
NmuCI	GTSAC	2 cut(s)	598, 828
NsbI	TGCGCA	1 cut(s)	122
NsiI	ATGCAT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	1157
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	348, 845
PflFI	GACNNNGTC	1 cut(s)	706
PkrI	GCNGC	2 cut(s)	319, 682
PleI	GAGTC	4 cut(s)	595, 681, 1101, 1142
PpsI	GAGTC	4 cut(s)	595, 681, 1101, 1142
Psp6I	CCWGG	2 cut(s)	190, 889
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	2 cut(s)	190, 889
PspPI	GGNCC	1 cut(s)	390
PsrI	GAACNNNNNNTAC	2 cut(s)	507, 539
PstI	CTGCAG	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	706
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	617, 638, 1024
RsaNI	GTAC	3 cut(s)	616, 637, 1023
RseI	CAYNNNNRTG	1 cut(s)	941
SaqAI	TTAA	6 cut(s)	108, 372, 479, 732, 773, 993
SatI	GCNGC	2 cut(s)	318, 681
Sau3AI	GATC	3 cut(s)	311, 462, 753
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	4 cut(s)	595, 682, 1102, 1142
ScrFI	CCNGG	2 cut(s)	192, 891
SduI	GDGCHC	2 cut(s)	240, 430
SexAI	ACCWGGT	1 cut(s)	889
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	941
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
Sse9I	AATT	7 cut(s)	73, 109, 203, 443, 492, 589, 719
SsiI	CCGC	1 cut(s)	876
SspMI	CTAG	4 cut(s)	102, 711, 918, 1032
StyD4I	CCNGG	2 cut(s)	190, 889
TaaI	ACNGT	6 cut(s)	178, 268, 381, 598, 706, 1084
TaiI	ACGT	4 cut(s)	427, 617, 951, 1024
TaqI	TCGA	3 cut(s)	848, 866, 1160
TasI	AATT	7 cut(s)	73, 109, 203, 443, 492, 589, 719
TfiI	GAWTC	2 cut(s)	348, 845
Tru1I	TTAA	6 cut(s)	108, 372, 479, 732, 773, 993
Tru9I	TTAA	6 cut(s)	108, 372, 479, 732, 773, 993
TscAI	CASTG	3 cut(s)	273, 603, 633
TseFI	GTSAC	2 cut(s)	598, 828
TseI	GCWGC	2 cut(s)	317, 680
Tsp45I	GTSAC	2 cut(s)	598, 828
TspDTI	ATGAA	4 cut(s)	71, 205, 456, 839
TspRI	CASTG	3 cut(s)	273, 603, 633
Tth111I	GACNNNGTC	1 cut(s)	706
VneI	GTGCAC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	1123
XapI	RAATTY	2 cut(s)	203, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XmiI	GTMKAC	2 cut(s)	168, 838
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	4 cut(s)	102, 711, 918, 1032
ZraI	GACGTC	1 cut(s)	949
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.