Rorug05G0454800
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
62835691 .. 62837208
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0454800.1

Sequence Viewer

Length: 699 bp
ATGATCCTCTTTTCCTGGATGGGCAATTTGCTGTCCAAATTGCATAACTATAGGGAACTAGCTGAGATCTTCAATAATGTGGTGGCAACAGACACAAGCCAAAAGCAACTTGAATGCGCTCCAAAACTCCCCAATGTTCGCTATGAGCACACTCCTCCGGTCCTGACCATACCTGAAATTGAACGAAAATTGGCCTCAAAATCTAGTGTTGATTTAGTGACCATTGCACAAGCCCTGCATTGGTTTGACCTCCCAAGTTTCTACGAGCAAGTGAAATGGGTGCTGAAGAAACCCCATGGGGTCATTGCTGCATGGTGCTACACTGTGCCTAGAGTTAACAACAATGTAGACACCGTCTTCGATCGGTTCTATTCCATTGATGTCGAACCCTACTGGGATCGGGCGCGTAAATTAGTGGACAACAGGTACAGCACCGTTGATTTTCCGTTTGAGCCGGTTAGGGGAGAAGGCAGTACAGGACCGTTTGAGTTTGTGACGGAGAGATTGATGGATTTGGATGGATTTTTCACGTACATAAGGTCGTGGTCAGCATATCAGACGGCTAAGGACAAGGGTGTTGAGCTTCTGAGTGACGATGTGATGGAGGAATTTAAGCAAGCTTGGAATGCTGGTGGCGGAGATGAACAGAAGGCTGTGAACTATCCTGTCTATTTAAGAGTCGGAAGAGTGGGGAATTGA

Protein Analysis

232

Amino Acids

26.79

Weight (kDa)

5.47

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43401 FvH4_3g43402 FvH4_3g43403 FvH4_3g43440 FvH4_3g43710 FvH4_3g43772
malus_domestica MD03G1021800.v1.1 MD03G1022000.v1.1 MD11G1024500.v1.1 MD11G1024700.v1.1 MD11G1025200.v1.1 MD11G1025500.v1.1 MD11G1025600.v1.1 MD11G1026200.v1.1 MD11G1026400.v1.1 MD11G1026500.v1.1 MD11G1026600.v1.1 MD11G1026800.v1.1 MD11G1027300.v1.1
prunus_persica Prupe.6G020400_v2.0.a1 Prupe.6G020500_v2.0.a1 Prupe.6G020600_v2.0.a1 Prupe.6G020700_v2.0.a1 Prupe.6G020800_v2.0.a1 Prupe.6G020900_v2.0.a1 Prupe.6G021000_v2.0.a1 Prupe.6G021500_v2.0.a1 Prupe.6G021600_v2.0.a1
pyrus_communis pycom03g01850 pycom03g01870 pycom03g01900 pycom03g01910 pycom11g01950 pycom11g01980 pycom11g01990 pycom11g02030 pycom11g02040
rosa_chinensis RchiOBHm_Chr5g0077411 RchiOBHm_Chr5g0077421 RchiOBHm_Chr5g0077571 RchiOBHm_Chr5g0077601 RchiOBHm_Chr5g0077621 RchiOBHm_Chr5g0077651 RchiOBHm_Chr5g0077661 RchiOBHm_Chr5g0077671 RchiOBHm_Chr5g0077701 RchiOBHm_Chr5g0077741 RchiOBHm_Chr5g0077791 RchiOBHm_Chr5g0077861 RchiOBHm_Chr5g0078871 RchiOBHm_Chr5g0078901 RchiOBHm_Chr5g0078941 RchiOBHm_Chr5g0079081 RchiOBHm_Chr5g0079091 RchiOBHm_Chr7g0233481
rosa_laevigata RLG00000036694 RLG00000036704 RLG00000036705 RLG00000036710 RLG00000036713 RLG00000036714 RLG00000036716 RLG00000036793 RLG00000036796 RLG00000036804 RLG00000036806
rosa_multiflora Rmu_co8130992.1_g000001 Rmu_sc0000029.1_g000037 Rmu_sc0002187.1_g000023 Rmu_sc0004168.1_g000001 Rmu_sc0004168.1_g000004 Rmu_sc0004168.1_g000018 Rmu_sc0004168.1_g000028 Rmu_sc0004168.1_g000033 Rmu_sc0004168.1_g000056 Rmu_sc0004277.1_g000009 Rmu_sc0004277.1_g000016 Rmu_sc0004277.1_g000018 Rmu_sc0004277.1_g000020 Rmu_sc0004277.1_g000084 Rmu_sc0004277.1_g000087 Rmu_sc0012487.1_g000001 Rmu_sc0012487.1_g000002
rosa_roxburghii Rroxscaffold_1G00003760 Rroxscaffold_1G00003780 Rroxscaffold_1G00004370 Rroxscaffold_1G00004400 Rroxscaffold_1G00004490 Rroxscaffold_1G00004510 Rroxscaffold_3G00227260 Rroxscaffold_5G00366480
rosa_rugosa Rorug05G0454800 Rorug05G0455700 Rorug05G0455900 Rorug05G0456100 Rorug05G0456300 Rorug05G0456700.1 Rorug05G0461800 Rorug05G0462100 Rorug07G0280900.1 Rorug07G0281000
rosa_samantha Rh5CG562200 Rh5DG543500 Rh5DG544200 Rh5DG544400 Rh5DG544500 Rh5DG544600 Rh5DG544700 Rh5DG544900 Rh5DG545200 Rh5DG549700 Rh7DG426000
rosa_wichuraiana Rw0G003130 Rw0G023780 Rw0G023790 Rw5G046780 Rw5G047330 Rw5G047350 Rw5G047370 Rw5G047390 Rw5G047420 Rw7G036050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 406
AciI CCGC 1 cut(s) 636
AclWI GGATC 1 cut(s) 405
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 3 cut(s) 428, 475, 533
AfiI CCNNNNNNNGG 2 cut(s) 240, 461
AgsI TTSAA 3 cut(s) 73, 113, 182
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 3 cut(s) 62, 583, 620
AluI AGCT 3 cut(s) 62, 583, 620
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 1 cut(s) 405
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 2 cut(s) 119, 406
AspS9I GGNCC 2 cut(s) 160, 479
AvaII GGWCC 2 cut(s) 160, 479
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 295
BccI CCATC 4 cut(s) 13, 502, 512, 595
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 16
BfaI CTAG 3 cut(s) 59, 204, 330
BfmI CTRYAG 1 cut(s) 49
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 160, 479
BmgT120I GGNCC 2 cut(s) 160, 479
BmrFI CCNGG 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 461
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 222, 303
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 24, 523
BseLI CCNNNNNNNGG 2 cut(s) 240, 461
BseMI GCAATG 2 cut(s) 222, 303
BseMII CTCAG 2 cut(s) 54, 578
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 406
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 158, 455
BslI CCNNNNNNNGG 2 cut(s) 240, 461
BsmI GAATGC 2 cut(s) 119, 631
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 3, 66, 361, 397
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 1 cut(s) 636
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 55, 579
BspFNI CGCG 1 cut(s) 406
BspPI GGATC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 222, 303
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 4 cut(s) 3, 66, 361, 397
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 4 cut(s) 325, 355, 436, 483
Bst6I CTCTTC 1 cut(s) 679
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 3 cut(s) 63, 564, 587
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 24, 523
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 2 cut(s) 119, 406
BstKTI GATC 4 cut(s) 6, 69, 364, 400
BstMBI GATC 4 cut(s) 3, 66, 361, 397
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 24, 523
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 2 cut(s) 119, 406
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 160, 479
Csp6I GTAC 3 cut(s) 427, 474, 532
CviAII CATG 2 cut(s) 296, 312
CviJI RGCY 9 cut(s) 62, 99, 194, 233, 454, 563, 583, 620, 653
CviKI_1 RGCY 9 cut(s) 62, 99, 194, 233, 454, 563, 583, 620, 653
CviQI GTAC 3 cut(s) 427, 474, 532
DdeI CTNAG 3 cut(s) 63, 564, 587
DpnI GATC 4 cut(s) 5, 68, 363, 399
DpnII GATC 4 cut(s) 3, 66, 361, 397
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
EciI GGCGGA 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 160, 479
Eco57I CTGAAG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 2 cut(s) 299, 315
FaiI YATR 8 cut(s) 45, 51, 144, 170, 297, 313, 536, 553
FatI CATG 2 cut(s) 295, 311
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 2 cut(s) 31, 530
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 3 cut(s) 59, 204, 330
GlaI GCGC 2 cut(s) 118, 405
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 158, 455
HhaI GCGC 2 cut(s) 119, 406
Hin1II CATG 2 cut(s) 299, 315
Hin6I GCGC 2 cut(s) 117, 404
HinP1I GCGC 2 cut(s) 117, 404
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 1 cut(s) 678
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 2 cut(s) 158, 455
Hpy166II GTNNAC 4 cut(s) 337, 349, 418, 658
Hpy188I TCNGA 3 cut(s) 558, 588, 683
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 4 cut(s) 337, 349, 418, 658
HpyAV CCTTC 2 cut(s) 461, 643
HpyCH4III ACNGT 4 cut(s) 325, 355, 436, 483
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 43, 227, 238, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 3 cut(s) 63, 564, 587
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 2 cut(s) 299, 315
HspAI GCGC 2 cut(s) 117, 404
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 4 cut(s) 3, 66, 361, 397
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 3 cut(s) 59, 204, 330
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 3 cut(s) 217, 493, 590
MalI GATC 4 cut(s) 5, 68, 363, 399
MboI GATC 4 cut(s) 3, 66, 361, 397
MboII GAAGA 4 cut(s) 61, 298, 349, 696
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 7 cut(s) 25, 38, 177, 188, 410, 608, 694
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 5 cut(s) 17, 165, 205, 260, 598
MseI TTAA 3 cut(s) 336, 612, 674
MspI CCGG 2 cut(s) 158, 455
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 2 cut(s) 119, 631
MvaI CCWGG 1 cut(s) 16
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 626
NcoI CCATGG 1 cut(s) 295
NdeII GATC 4 cut(s) 3, 66, 361, 397
NlaIII CATG 2 cut(s) 299, 315
NmuCI GTSAC 3 cut(s) 217, 493, 590
PctI GAATGC 2 cut(s) 119, 631
PflFI GACNNNGTC 1 cut(s) 353
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 1 cut(s) 310
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
Ppu21I YACGTR 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspPI GGNCC 2 cut(s) 160, 479
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 3 cut(s) 428, 475, 533
RsaNI GTAC 3 cut(s) 427, 474, 532
SaqAI TTAA 3 cut(s) 336, 612, 674
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 4 cut(s) 3, 66, 361, 397
Sau96I GGNCC 2 cut(s) 160, 479
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 150
SetI ASST 8 cut(s) 64, 175, 252, 428, 533, 542, 585, 622
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 2 cut(s) 160, 479
Sse9I AATT 7 cut(s) 25, 38, 177, 188, 410, 608, 694
SsiI CCGC 1 cut(s) 636
SspMI CTAG 3 cut(s) 59, 204, 330
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 325, 355, 436, 483
TaiI ACGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 360, 384
TasI AATT 7 cut(s) 25, 38, 177, 188, 410, 608, 694
TatI WGTACW 1 cut(s) 473
Tru1I TTAA 3 cut(s) 336, 612, 674
Tru9I TTAA 3 cut(s) 336, 612, 674
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 3 cut(s) 217, 493, 590
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 3 cut(s) 217, 493, 590
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 2 cut(s) 435, 512
TspRI CASTG 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 160, 479
XapI RAATTY 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 3 cut(s) 59, 204, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.